View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17641_high_4 (Length: 604)

Name: NF17641_high_4
Description: NF17641
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17641_high_4
NF17641_high_4
[»] chr3 (1 HSPs)
chr3 (3-587)||(28774346-28774930)
[»] chr6 (1 HSPs)
chr6 (7-36)||(29091621-29091650)
[»] chr4 (1 HSPs)
chr4 (7-36)||(48812802-48812831)


Alignment Details
Target: chr3 (Bit Score: 565; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 565; E-Value: 0
Query Start/End: Original strand, 3 - 587
Target Start/End: Original strand, 28774346 - 28774930
Alignment:
Q  3 cagaacaacctagggacactataatgcaccaaagctgcagaccagaagcacacaactctgcatctgaacatcaactctagcagcaggcggcaccagaatc 102  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28774346 cagaacaacctagggacactataatgcaccaaagctgcagaccagaagcacacaactctgcatctgaacatcaactctagcagcaggcggcaccagaatc 28774445  T
Q  103 ctaaattttcccctttacaccataaaaaggcggcagaagacaggcctcaaaaactgccgtcaaataatactaccacagaaccaaaactgaaacggtcctg 202  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28774446 ctaaattttcccctttacaccataaaaaggcggcagaagacaggcctcaaaaactgccgtcaaataatactaccacagaaccaaaactgaaacggtcctg 28774545  T
Q  203 cactaaagtaaggccccaacggcactacagtgtgtacactgccataaatcacacctacaaactaccaacctgctacacttaagaactagagaaaactaca 302  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  28774546 cactaaagtaaggccccaacggcactacagtgtgtacactgccataaatcacacctacaaattaccaacctgctacacttaagaactagagaaaactaca 28774645  T
Q  303 gtgtcctgcatccggaaaaacaactgcagaaactcaaaccaaaagcagcactagaagcaaaacacacagaattggaagctttgtgtcagcatcagcagga 402  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28774646 gtgtcctgcatccggaaaaacaactacagaaactcaaaccaaaagcagcactagaagcaaaacacacagaattggaagctttgtgtcagcatcagcagga 28774745  T
Q  403 cacaatcaaccagaataacaactaagcccaaagcaggcctcacatagactgacagcagcgaccagaaaactctttgccatggacaccaactaaaatgtac 502  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||    
T  28774746 cacaatcaaccagaataacaactaagcccaaagcaggcctcacatagactgacagcagcgaccagaaaactcttcgccatggacaccaaccaaaatgtac 28774845  T
Q  503 ccctcctcacccactccttacctgtataaacagttaataggatcccacctccactcatagagaaagcagtgagaaatcttccctc 587  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28774846 ccctcctcgcccactccttacctgtataaacagttaataggatcccacctccactcatagagaaagcagtgagaaatcttccctc 28774930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 7 - 36
Target Start/End: Complemental strand, 29091650 - 29091621
Alignment:
Q  7 acaacctagggacactataatgcaccaaag 36  Q
    ||||||||||||||||||||||||||||||    
T  29091650 acaacctagggacactataatgcaccaaag 29091621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 7 - 36
Target Start/End: Complemental strand, 48812831 - 48812802
Alignment:
Q  7 acaacctagggacactataatgcaccaaag 36  Q
    ||||||||||||||||||||||||||||||    
T  48812831 acaacctagggacactataatgcaccaaag 48812802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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