View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17641_high_5 (Length: 562)
Name: NF17641_high_5
Description: NF17641
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17641_high_5 |
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Alignment Details
Target: chr7 (Bit Score: 362; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 16 - 482
Target Start/End: Original strand, 26952390 - 26952857
Alignment:
| Q |
16 |
atatatgcaagtggtcttgagaagggttgatttttttcctttgaatttgtctcgcttaacaaccttgaggnnnnnnnnn-gtcttttggttcatttaatt |
114 |
Q |
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| T |
26952390 |
atatatgcaagtagtcttgagaagagttgatttttt-cctttaaatttgtctcgcttaacaaccttgaggttttttttttgtcttttcgttcatttaatt |
26952488 |
T |
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| Q |
115 |
taaactatcgagccgaaccgagttgttcaaaacaaatggataactctttgtaacttaagtagattttttattatccctaatgacttttttgaatggatta |
214 |
Q |
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| T |
26952489 |
tgaactatcgaaccgaaccgagttgttcaaatcaaatggataactctttgtatcctaagtagatttttgattatccctaatgacttttttgaatggatta |
26952588 |
T |
|
| Q |
215 |
tctctaataacttgattgctaaagtgatcccttcttccttgattaattaggatgatttcaatatatccgaaataccttctttggaagatgtcaaggcctc |
314 |
Q |
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| T |
26952589 |
tctctaatgacttgattgctaaagtgatcccttcttccttgattaatcaggatgatttcaatatatccgaaataccttcttttgaagatgtcaaggcctc |
26952688 |
T |
|
| Q |
315 |
tt-atagggatgatgttcacttggttaacctaagttttttaaacatgacaaataagaaaatattaacataattctttaaaaataattcgatatttagtta |
413 |
Q |
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| T |
26952689 |
ttaatagggatgatgttcacttggttaacctaagctttttaaacatgacaaataagaaaatattaacataattctttaaaaataattcgatatttagtta |
26952788 |
T |
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| Q |
414 |
agatctcatttttagttaatggcaagcatggtttatttcttttccaaaagagggtgtaaggcatgggag |
482 |
Q |
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| T |
26952789 |
agatctcatttttagttaatggcaagcatggtttatttcttttccaaaagagggtgtaaggcatgggag |
26952857 |
T |
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Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 100 - 143
Target Start/End: Original strand, 43798879 - 43798922
Alignment:
| Q |
100 |
ttggttcatttaatttaaactatcgagccgaaccgagttgttca |
143 |
Q |
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| T |
43798879 |
ttggttcatttgatttgacctatcgagccgaaccgagttgttca |
43798922 |
T |
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