View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17641_high_8 (Length: 473)
Name: NF17641_high_8
Description: NF17641
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17641_high_8 |
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Alignment Details
Target: chr8 (Bit Score: 378; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 6 - 457
Target Start/End: Original strand, 35405772 - 35406231
Alignment:
| Q |
6 |
accttctagagagcctttttgagccacaccaaatccagagcaaagtctacaacctccctaattaatttctttgatgtatgagctttgttcaatgaatttg |
105 |
Q |
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| T |
35405772 |
accttcaagagaacctgtttgtgccacaccaaatccagagcatagtctacaacctccttaattaattactttgatgtatgagctttgttcaatgaatttg |
35405871 |
T |
|
| Q |
106 |
aatattttgatatccttcacattttgtccaattttattatttcctaagttgaatttaaaatttatgcaaatacatgagttttcgatttggttatacacca |
205 |
Q |
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| T |
35405872 |
aatattttgatctccttcacattttgtccaattttattatttcctaagttgaatttaaaatttatgcaaatacatgagttttcgatttggttatacacca |
35405971 |
T |
|
| Q |
206 |
actctttcgaggttttattagatttgatgttgaagttttagccgattaatga----ttaggaatatttttatctcaaggcaaggtaattgtgaacgaaca |
301 |
Q |
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| T |
35405972 |
actctttcgaggttttattagatttgatgttgaagttttaaccgattaatgatcatttaggaatattgttatctcaaggcaaggtaattgtgaacgaaca |
35406071 |
T |
|
| Q |
302 |
ataactctt----gaaggaaactcataacctaggttctttttcacattttcatgatttataaaagtgtcgtattattcaaaagtttttaatagtcttggt |
397 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||| |
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| T |
35406072 |
ataactctttaaggaaggaaactcataacctaggttctttttcacattttcatgatttctaaaagtgtcgtattcttcaaaagtttttaatagtcttggt |
35406171 |
T |
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| Q |
398 |
attgagaacctcaagtagagaggggtagcactatcactatccttgtcccatgtttcatct |
457 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35406172 |
attgagaacctcaagtagagaggggtagcactatcactatccttgtcccatgtttcatct |
35406231 |
T |
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