View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17641_low_10 (Length: 307)

Name: NF17641_low_10
Description: NF17641
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17641_low_10
NF17641_low_10
[»] chr8 (8 HSPs)
chr8 (12-307)||(35405470-35405773)
chr8 (113-307)||(16421082-16421273)
chr8 (8-307)||(2871951-2872258)
chr8 (113-277)||(7452229-7452390)
chr8 (113-239)||(412502-412629)
chr8 (113-282)||(19384807-19384973)
chr8 (12-81)||(16421315-16421384)
chr8 (26-81)||(7452131-7452186)
[»] chr7 (14 HSPs)
chr7 (113-307)||(45235827-45236018)
chr7 (29-304)||(45942633-45942916)
chr7 (117-307)||(13439934-13440121)
chr7 (147-307)||(3104816-3104972)
chr7 (113-301)||(15653783-15653968)
chr7 (147-285)||(12378819-12378953)
chr7 (113-301)||(46623581-46623767)
chr7 (29-81)||(45235732-45235784)
chr7 (26-73)||(28327135-28327182)
chr7 (26-81)||(46623483-46623538)
chr7 (8-73)||(13439814-13439879)
chr7 (12-73)||(30385965-30386025)
chr7 (29-81)||(3104685-3104737)
chr7 (26-81)||(15654011-15654066)
[»] chr5 (8 HSPs)
chr5 (8-304)||(32918078-32918383)
chr5 (113-304)||(15499721-15499909)
chr5 (113-307)||(6264270-6264461)
chr5 (113-307)||(34480833-34481024)
chr5 (114-277)||(10487022-10487182)
chr5 (12-70)||(34480721-34480779)
chr5 (12-81)||(6264504-6264573)
chr5 (12-81)||(15499952-15500021)
[»] chr1 (17 HSPs)
chr1 (29-301)||(14119547-14119832)
chr1 (113-307)||(3692504-3692695)
chr1 (117-307)||(32353369-32353556)
chr1 (117-307)||(48073503-48073690)
chr1 (114-307)||(37530444-37530634)
chr1 (113-277)||(36929044-36929205)
chr1 (113-277)||(48265820-48265981)
chr1 (147-307)||(36305696-36305852)
chr1 (8-70)||(38231448-38231510)
chr1 (8-73)||(3692388-3692453)
chr1 (113-277)||(21528038-21528199)
chr1 (8-81)||(21527922-21527995)
chr1 (8-73)||(32353611-32353676)
chr1 (26-71)||(36305563-36305608)
chr1 (26-71)||(36928946-36928991)
chr1 (12-73)||(37530329-37530392)
chr1 (8-81)||(48073738-48073811)
[»] chr6 (13 HSPs)
chr6 (29-304)||(25317636-25317919)
chr6 (29-304)||(26205130-26205413)
chr6 (8-304)||(15673586-15673890)
chr6 (114-307)||(23347538-23347728)
chr6 (12-307)||(8872898-8873201)
chr6 (113-282)||(33629974-33630140)
chr6 (113-278)||(1682917-1683079)
chr6 (12-73)||(13755230-13755291)
chr6 (113-187)||(19349144-19349219)
chr6 (8-78)||(19349026-19349096)
chr6 (8-81)||(23347772-23347845)
chr6 (113-204)||(19256922-19257013)
chr6 (8-57)||(1682807-1682856)
[»] chr2 (13 HSPs)
chr2 (8-302)||(13549885-13550187)
chr2 (113-304)||(22052504-22052692)
chr2 (127-307)||(43627390-43627567)
chr2 (128-302)||(31085714-31085885)
chr2 (117-307)||(33547753-33547940)
chr2 (113-307)||(9949336-9949527)
chr2 (152-301)||(26180005-26180149)
chr2 (8-73)||(43627260-43627325)
chr2 (12-81)||(22052392-22052461)
chr2 (8-73)||(33547633-33547698)
chr2 (29-81)||(31085943-31085995)
chr2 (12-63)||(9949588-9949639)
chr2 (26-71)||(45421297-45421342)
[»] chr3 (15 HSPs)
chr3 (8-307)||(2813572-2813879)
chr3 (8-307)||(6176550-6176857)
chr3 (127-307)||(7146932-7147109)
chr3 (117-307)||(23601654-23601841)
chr3 (113-307)||(29309285-29309476)
chr3 (113-301)||(9378974-9379159)
chr3 (162-307)||(14904238-14904379)
chr3 (12-307)||(25873182-25873487)
chr3 (113-282)||(49732029-49732196)
chr3 (12-73)||(29309173-29309234)
chr3 (26-307)||(30167417-30167706)
chr3 (8-73)||(7146802-7146867)
chr3 (8-73)||(23601534-23601599)
chr3 (155-206)||(28675097-28675148)
chr3 (6-78)||(28675238-28675310)
[»] chr4 (14 HSPs)
chr4 (113-307)||(8487053-8487244)
chr4 (113-307)||(20674899-20675090)
chr4 (113-307)||(2631275-2631466)
chr4 (117-307)||(23873548-23873735)
chr4 (117-307)||(55298501-55298688)
chr4 (113-282)||(3130076-3130242)
chr4 (113-277)||(8655175-8655336)
chr4 (113-301)||(7663317-7663501)
chr4 (8-71)||(8487297-8487360)
chr4 (11-73)||(2631162-2631224)
chr4 (9-70)||(20673471-20673532)
chr4 (113-195)||(23279484-23279567)
chr4 (26-71)||(7663554-7663599)
chr4 (8-81)||(23873782-23873855)
[»] scaffold0418 (2 HSPs)
scaffold0418 (113-301)||(7552-7737)
scaffold0418 (26-71)||(7454-7499)
[»] scaffold0029 (1 HSPs)
scaffold0029 (113-204)||(134807-134899)
[»] scaffold0002 (2 HSPs)
scaffold0002 (113-204)||(312634-312726)
scaffold0002 (113-204)||(328088-328180)


Alignment Details
Target: chr8 (Bit Score: 182; Significance: 2e-98; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 12 - 307
Target Start/End: Original strand, 35405470 - 35405773
Alignment:
Q  12 cacatagaaatcacataagttgcataaaagaacgtctagcaacaccatcacctgtcaaatgaataaactgnnnnnnnntgatcggaaatattatctgcgt 111  Q
    |||||||||| || ||||||||||||||||||||||||||||||||| |||||||||||||| |||||||        ||||||||||||||||||||||    
T  35405470 cacatagaaaccatataagttgcataaaagaacgtctagcaacaccaccacctgtcaaatgagtaaactgaaaaaaa-tgatcggaaatattatctgcgt 35405568  T
Q  112 c------------accaatccaatcttgcaccaaatgccacagagaac-aaaagtattacacaataaaaagagatgttgtgccgtttcaggatgaccaca 198  Q
    |            |||||||||||| |||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  35405569 ccaccccatagcaaccaatccaatcctgcaccaaatgccacagagaaccaaaaatattacacaataaaaagagatgttgtgccgtttcaggatgaccaca 35405668  T
Q  199 accagcaattaacacacgaggacatgtcgggcgacaacacccgtcttgcaatcaaatttgtctttgttggtaaacgatcacggatgaacctccacgcgaa 298  Q
    ||||||||    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  35405669 accagcaa----cacacgaggacatgtcgggcgacaacacccgtcttgcaatcaaatttgtctttgttggtaaacgatcacggatgagcctccacgcgaa 35405764  T
Q  299 aacggaaac 307  Q
    |||| ||||    
T  35405765 aacgaaaac 35405773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 113 - 307
Target Start/End: Complemental strand, 16421273 - 16421082
Alignment:
Q  113 accaatccaatcttgcaccaaatgccacagagaac-aaaagtattacacaataaaaagagatgttgtgccgtttcaggatgaccacaaccagcaattaac 211  Q
    |||||||||| || ||||||||||||||||||||| |||||||| |||||| ||||| ||| || |||||| ||||||||||||||| |||||||    |    
T  16421273 accaatccaagctcgcaccaaatgccacagagaaccaaaagtatcacacaacaaaaatagacgtcgtgccgattcaggatgaccacagccagcaa----c 16421178  T
Q  212 acacgaggacatgtcgggcgacaacacccgtcttgcaatcaaatttgtctttgttggtaaacgatcacggatgaacctccacgcgaaaacggaaac 307  Q
    ||||||||||||||| ||||||||||||||||| ||||||||||||||| ||||||||||||||||||||| || || |||||| |||||||||||    
T  16421177 acacgaggacatgtccggcgacaacacccgtctagcaatcaaatttgtccttgttggtaaacgatcacggaggagccgccacgcaaaaacggaaac 16421082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 8 - 307
Target Start/End: Original strand, 2871951 - 2872258
Alignment:
Q  8 caggcacatagaaatcacataagttgcataaaagaacgtctagcaacaccatcacctgtcaaatgaataaactgnnnnnnnntgatcggaaatattatct 107  Q
    |||||||| ||||  || |||||||||||||||||||||| |||||||||| ||||| |||||||| | |||||        ||||| ||||||||||||    
T  2871951 caggcacaaagaagccatataagttgcataaaagaacgtccagcaacaccaccacctatcaaatgagtgaactgtaaaaaa-tgatctgaaatattatct 2872049  T
Q  108 gcgtc------------accaatccaatcttgcaccaaatgccacagagaac-aaaagtattacacaataaaaagagatgttgtgccgtttcaggatgac 194  Q
    | |||            ||| ||||| ||  ||||||||||||||||||||| |||||||| |||||||||||| |||||| | |||| |||||||||||    
T  2872050 gtgtccaccccaaagcaaccgatccagtcacgcaccaaatgccacagagaaccaaaagtatcacacaataaaaatagatgtcgagccgattcaggatgac 2872149  T
Q  195 cacaaccagcaattaacacacgaggacatgtcgggcgacaacacccgtcttgcaatcaaatttgtctttgttggtaaacgatcacggatgaacctccacg 294  Q
    ||||| ||||||    ||||||| ||||| || ||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||| ||||||||    
T  2872150 cacaatcagcaa----cacacgaagacatatcaggcgacaacacccgtctagcaatcaaatttgtccttgttggtaaacgatcacggatgagcctccacg 2872245  T
Q  295 cgaaaacggaaac 307  Q
    | |||||||||||    
T  2872246 caaaaacggaaac 2872258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 113 - 277
Target Start/End: Original strand, 7452229 - 7452390
Alignment:
Q  113 accaatccaatcttgcaccaaatgccacagagaac-aaaagtattacacaataaaaagagatgttgtgccgtttcaggatgaccacaaccagcaattaac 211  Q
    ||||||||||||  |||||| |||||| || |||| |||||| |||||||| | |||||||||||| ||||||||||||||||| ||||||||     ||    
T  7452229 accaatccaatcacgcaccatatgccaaagcgaaccaaaagtgttacacaacagaaagagatgttgagccgtttcaggatgaccgcaaccagc----gac 7452324  T
Q  212 acacgaggacatgtcgggcgacaacacccgtcttgcaatcaaatttgtctttgttggtaaacgatc 277  Q
    |||  ||||||| || ||| ||||||||||||  ||||||||||| ||||| |||||||| |||||    
T  7452325 acataaggacatatcaggcaacaacacccgtcgagcaatcaaattagtcttcgttggtaaccgatc 7452390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 113 - 239
Target Start/End: Complemental strand, 412629 - 412502
Alignment:
Q  113 accaatccaatcttgcaccaaatgccacagagaacaaaa-----gtattacacaataaaaagagatgttgtgccgtttcaggatgaccacaaccagcaat 207  Q
    ||||||||||||| ||||||||||||||||||| | |||     |||| |||||||||| |||||||||| |||| |||||||||||||||||||||       
T  412629 accaatccaatctcgcaccaaatgccacagagagccaaaattaagtatcacacaataaatagagatgttgagccgattcaggatgaccacaaccagc--- 412533  T
Q  208 taacacacgaggacatgtcgggcgacaacacc 239  Q
     ||||||||||||||| || | ||||||||||    
T  412532 -aacacacgaggacatatcagacgacaacacc 412502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 113 - 282
Target Start/End: Complemental strand, 19384973 - 19384807
Alignment:
Q  113 accaatccaatcttgcaccaaatgccacagagaac-aaaagtattacacaataaaaagagatgttgtgccgtttcaggatgaccacaaccagcaattaac 211  Q
    ||||||||||||  |||||| |||||| || |||| ||||||||||||||| || || |||||||| |||||||| |||||||| ||||||||     ||    
T  19384973 accaatccaatcacgcaccatatgccaaagcgaaccaaaagtattacacaacaagaatagatgttgggccgtttccggatgaccgcaaccagc----gac 19384878  T
Q  212 acacgaggacatgtcgggcgacaacacccgtcttgcaatcaaatttgtctttgttggtaaacgatcacgga 282  Q
    |||  ||||||||||   ||| ||||||||||  ||||||||||| ||||| || ||||||||||| ||||    
T  19384877 acataaggacatgtcattcgataacacccgtcgagcaatcaaattagtcttcgtcggtaaacgatctcgga 19384807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 12 - 81
Target Start/End: Complemental strand, 16421384 - 16421315
Alignment:
Q  12 cacatagaaatcacataagttgcataaaagaacgtctagcaacaccatcacctgtcaaatgaataaactg 81  Q
    |||||||||  || || |||||||||||||||||||||||| ||||| |||||||||||||| | |||||    
T  16421384 cacatagaagccatattagttgcataaaagaacgtctagcagcaccaccacctgtcaaatgagtgaactg 16421315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 26 - 81
Target Start/End: Original strand, 7452131 - 7452186
Alignment:
Q  26 ataagttgcataaaagaacgtctagcaacaccatcacctgtcaaatgaataaactg 81  Q
    ||||||||||||||||||||||||| |||| || |||||||||||| | |||||||    
T  7452131 ataagttgcataaaagaacgtctagaaacagcaccacctgtcaaataagtaaactg 7452186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 135; Significance: 2e-70; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 113 - 307
Target Start/End: Original strand, 45235827 - 45236018
Alignment:
Q  113 accaatccaatcttgcaccaaatgccacagagaac-aaaagtattacacaataaaaagagatgttgtgccgtttcaggatgaccacaaccagcaattaac 211  Q
    ||||||||||||| |||||||||| |||||||||| ||||||||||||||||||||||||||||||| | ||||||||||||||||||||| |||    |    
T  45235827 accaatccaatctcgcaccaaatgtcacagagaaccaaaagtattacacaataaaaagagatgttgtactgtttcaggatgaccacaaccaacaa----c 45235922  T
Q  212 acacgaggacatgtcgggcgacaacacccgtcttgcaatcaaatttgtctttgttggtaaacgatcacggatgaacctccacgcgaaaacggaaac 307  Q
    ||||||||||||||| ||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||    
T  45235923 acacgaggacatgtcaggcgacatcacccgtcttgcaatcaaatttatctttgttggtaaacgatcacggatgagcctccacgcgaaaacggaaac 45236018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 29 - 304
Target Start/End: Original strand, 45942633 - 45942916
Alignment:
Q  29 agttgcataaaagaacgtctagcaacaccatcacctgtcaaatgaataaactgnnnnnnnntgatcggaaatattatctgcgtc------------acca 116  Q
    ||||||||||||||| || ||||||||||| |||||||||||||| |||||||        |||||||||||||||| || |||            ||||    
T  45942633 agttgcataaaagaatgtgtagcaacaccaccacctgtcaaatgagtaaactgtaaaaaa-tgatcggaaatattatttgtgtccaccccatagcaacca 45942731  T
Q  117 atccaatcttgcaccaaatgccacagagaac-aaaagtattacacaataaaaagagatgttgtgccgtttcaggatgaccacaaccagcaattaacacac 215  Q
    ||| ||||| |||||| ||| |||||||| | |||||||||||||||||||||||||||||| ||||  |||||||||||||||||| |||    |||||    
T  45942732 atcaaatctcgcaccagatggcacagagagccaaaagtattacacaataaaaagagatgttgcgccgactcaggatgaccacaaccaacaa----cacac 45942827  T
Q  216 gaggacatgtcgggcgacaacacccgtcttgcaatcaaatttgtctttgttggtaaacgatcacggatgaacctccacgcgaaaacgga 304  Q
    ||||| ||||| ||||||||||||||| | ||||||||||| ||| |||||||||||||||| | ||||| ||||||||||||||||||    
T  45942828 gaggatatgtcaggcgacaacacccgtttagcaatcaaattagtccttgttggtaaacgatctcagatgagcctccacgcgaaaacgga 45942916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 117 - 307
Target Start/End: Original strand, 13439934 - 13440121
Alignment:
Q  117 atccaatcttgcaccaaatgccacagagaac-aaaagtattacacaataaaaagagatgttgtgccgtttcaggatgaccacaaccagcaattaacacac 215  Q
    ||||||||  ||||||||||||||||||||| |||||||| |||||||||||| |||||| | |||| |||||||||||| || |||||||    |||||    
T  13439934 atccaatcacgcaccaaatgccacagagaaccaaaagtatcacacaataaaaatagatgtcgagccgattcaggatgaccgcagccagcaa----cacac 13440029  T
Q  216 gaggacatgtcgggcgacaacacccgtcttgcaatcaaatttgtctttgttggtaaacgatcacggatgaacctccacgcgaaaacggaaac 307  Q
    || |||||||| | ||||||||||||||  ||||||||||||||| ||||||||||||||||||||| || ||||||||| |||||||||||    
T  13440030 gaagacatgtcagacgacaacacccgtcgagcaatcaaatttgtccttgttggtaaacgatcacggaggagcctccacgcaaaaacggaaac 13440121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 147 - 307
Target Start/End: Original strand, 3104816 - 3104972
Alignment:
Q  147 caaaagtattacacaataaaaagagatgttgtgccgtttcaggatgaccacaaccagcaattaacacacgaggacatgtcgggcgacaacacccgtcttg 246  Q
    ||||||||||||||||||||||||| |||||| ||||||||||||| || || ||| |    ||||||| |||||||||| | || || ||||||||| |    
T  3104816 caaaagtattacacaataaaaagaggtgttgtcccgtttcaggatgtccgcagccaac----aacacacaaggacatgtcagccgccagcacccgtctag 3104911  T
Q  247 caatcaaatttgtctttgttggtaaacgatcacggatgaacctccacgcgaaaacggaaac 307  Q
    | ||||||||||||||||||||||||||||||||||||| | ||||| | ||||| |||||    
T  3104912 ctatcaaatttgtctttgttggtaaacgatcacggatgagcatccacacaaaaactgaaac 3104972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 113 - 301
Target Start/End: Complemental strand, 15653968 - 15653783
Alignment:
Q  113 accaatccaatcttgcaccaaatgccacagagaac-aaaagtattacacaataaaaagagatgttgtgccgtttcaggatgaccacaaccagcaattaac 211  Q
    ||||||||||||  |||||| |||||| || |||| |||||| |||||||| |||||||||||||| ||||||||||||||||| ||||||||     ||    
T  15653968 accaatccaatcacgcaccatatgccaaagcgaaccaaaagtgttacacaacaaaaagagatgttgagccgtttcaggatgaccgcaaccagc----gac 15653873  T
Q  212 acacgaggacatgtcgggcgacaacacccgtcttgcaatcaaatttgtctttgttggtaaacgatcacggatgaacctccacgcgaaaac 301  Q
    |||  ||||||| || | || |||||||||||  |||||||| || |||||||||||||||||||| |||| ||  |||||||| |||||    
T  15653872 acataaggacatatcagtcggcaacacccgtcgagcaatcaagttagtctttgttggtaaacgatcccggaggagtctccacgcaaaaac 15653783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 147 - 285
Target Start/End: Complemental strand, 12378953 - 12378819
Alignment:
Q  147 caaaagtattacacaataaaaagagatgttgtgccgtttcaggatgaccacaaccagcaattaacacacgaggacatgtcgggcgacaacacccgtcttg 246  Q
    ||||||| ||||||||||||||||| ||||| |||||||||| ||| | ||| |||||||    ||||||| |||||||| | || ||||||| |||| |    
T  12378953 caaaagtgttacacaataaaaagaggtgttgcgccgtttcagaatgtctacagccagcaa----cacacgatgacatgtcagtcgtcaacacctgtctag 12378858  T
Q  247 caatcaaatttgtctttgttggtaaacgatcacggatga 285  Q
    |||||| |||| ||||||||||||| |||||||||||||    
T  12378857 caatcagatttatctttgttggtaaccgatcacggatga 12378819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 113 - 301
Target Start/End: Original strand, 46623581 - 46623767
Alignment:
Q  113 accaatccaatcttgcaccaaatgccacagagaac-aaaagtattacacaataaaaaga-gatgttgtgccgtttcaggatgaccacaaccagcaattaa 210  Q
    ||||||||||||  |||||| |||||| || |||| |||||| ||||| || ||||| | ||||||| |||| |||||||||||| ||||||||     |    
T  46623581 accaatccaatcacgcaccatatgccaaagtgaaccaaaagtgttacataacaaaaaaaagatgttgagccgattcaggatgaccgcaaccagc----ga 46623676  T
Q  211 cacacgaggacatgtcgggcgacaacacccgtcttgcaatcaaatttgtctttgttggtaaacgatcacggatgaacctccacgcgaaaac 301  Q
    ||||  ||||||| || | || |||||||| ||  |||||||| ||  |||| |||||||||||||| |||||||  |||||||| |||||    
T  46623677 cacataaggacatatcagtcggcaacacccttcgagcaatcaagttattcttcgttggtaaacgatcccggatgagtctccacgcaaaaac 46623767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 29 - 81
Target Start/End: Original strand, 45235732 - 45235784
Alignment:
Q  29 agttgcataaaagaacgtctagcaacaccatcacctgtcaaatgaataaactg 81  Q
    |||||||||||||||||||||||||  ||| |||||||||||||| |||||||    
T  45235732 agttgcataaaagaacgtctagcaattccaccacctgtcaaatgagtaaactg 45235784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 26 - 73
Target Start/End: Original strand, 28327135 - 28327182
Alignment:
Q  26 ataagttgcataaaagaacgtctagcaacaccatcacctgtcaaatga 73  Q
    ||||||||||||||||||||||||||| ||||| ||||| ||||||||    
T  28327135 ataagttgcataaaagaacgtctagcagcaccaccacctatcaaatga 28327182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 26 - 81
Target Start/End: Original strand, 46623483 - 46623538
Alignment:
Q  26 ataagttgcataaaagaacgtctagcaacaccatcacctgtcaaatgaataaactg 81  Q
    ||||||||||||||||||||||||| |||| || |||||||||||| | |||||||    
T  46623483 ataagttgcataaaagaacgtctagaaacaacaccacctgtcaaataagtaaactg 46623538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 8 - 73
Target Start/End: Original strand, 13439814 - 13439879
Alignment:
Q  8 caggcacatagaaatcacataagttgcataaaagaacgtctagcaacaccatcacctgtcaaatga 73  Q
    |||||||| ||||  || || |||||||||||||||||||||||| ||||| ||||| ||||||||    
T  13439814 caggcacaaagaagccagattagttgcataaaagaacgtctagcagcaccaccacctatcaaatga 13439879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 12 - 73
Target Start/End: Original strand, 30385965 - 30386025
Alignment:
Q  12 cacatagaaatcacataagttgcataaaagaacgtctagcaacaccatcacctgtcaaatga 73  Q
    |||||||||  || |||||||||||||| ||| |||||||||||||| ||||||||||||||    
T  30385965 cacatagaagccatataagttgcataaa-gaatgtctagcaacaccaccacctgtcaaatga 30386025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 29 - 81
Target Start/End: Original strand, 3104685 - 3104737
Alignment:
Q  29 agttgcataaaagaacgtctagcaacaccatcacctgtcaaatgaataaactg 81  Q
    ||||||||||||||||||||||||  | || ||| ||||||||||||||||||    
T  3104685 agttgcataaaagaacgtctagcattagcaccacttgtcaaatgaataaactg 3104737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 26 - 81
Target Start/End: Complemental strand, 15654066 - 15654011
Alignment:
Q  26 ataagttgcataaaagaacgtctagcaacaccatcacctgtcaaatgaataaactg 81  Q
    ||||||||||||||||||||||||| |||| || ||||| |||||| | |||||||    
T  15654066 ataagttgcataaaagaacgtctagaaacagcaccacctatcaaataagtaaactg 15654011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 133; Significance: 4e-69; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 8 - 304
Target Start/End: Original strand, 32918078 - 32918383
Alignment:
Q  8 caggcacatagaaatcacataagttgcataaaagaacgtctagcaacaccatcacctgtcaaatgaataaactgnnnnnnnntgatcggaaatattatct 107  Q
    |||||||||||||  || || |||||||||||||| ||||||||||||||| |||||||||||||| |||||||        ||||| ||||||||||||    
T  32918078 caggcacatagaagccaaattagttgcataaaagaccgtctagcaacaccaccacctgtcaaatgagtaaactgtaaaaaa-tgatcagaaatattatct 32918176  T
Q  108 gcgtc------------accaatccaatcttgcaccaaatgccacagagaacaaaa--gtattacacaataaaaagagatgttgtgccgtttcaggatga 193  Q
    | |||            ||||||||||||| |||||||||| |||| ||||| |||  |||||||||||||||||||||||||| |||| ||||||||||    
T  32918177 gtgtccaccccatagcaaccaatccaatctcgcaccaaatggcacatagaaccaaaaggtattacacaataaaaagagatgttgcgccgattcaggatga 32918276  T
Q  194 ccacaaccagcaattaacacacgaggacatgtcgggcgacaacacccgtcttgcaatcaaatttgtctttgttggtaaacgatcacggatgaacctccac 293  Q
    |||||||||||||    ||||| |||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| |||||||    
T  32918277 ccacaaccagcaa----cacacaaggacatgtcaggcgacaacacccgtctagcaatcaaatttgtctttgttggtaaacgatctcggatgagcctccac 32918372  T
Q  294 gcgaaaacgga 304  Q
    |||||||||||    
T  32918373 gcgaaaacgga 32918383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 113 - 304
Target Start/End: Complemental strand, 15499909 - 15499721
Alignment:
Q  113 accaatccaatcttgcaccaaatgccacagagaac-aaaagtattacacaataaaaagagatgttgtgccgtttcaggatgaccacaaccagcaattaac 211  Q
    ||||||||||||  ||||||||||||||||||||| |||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||    |    
T  15499909 accaatccaatcacgcaccaaatgccacagagaaccaaaagtattacacaataaaaagagatgttgcgccgattcaggatgaccacaaccagcaa----c 15499814  T
Q  212 acacgaggacatgtcgggcgacaacacccgtcttgcaatcaaatttgtctttgttggtaaacgatcacggatgaacctccacgcgaaaacgga 304  Q
    ||||||||||||||| |||  |||||||||||| ||||||||||||||| |||||||||||| ||||||||||| ||||||||| ||||||||    
T  15499813 acacgaggacatgtcaggcaccaacacccgtctagcaatcaaatttgtccttgttggtaaacaatcacggatgagcctccacgcaaaaacgga 15499721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 113 - 307
Target Start/End: Complemental strand, 6264461 - 6264270
Alignment:
Q  113 accaatccaatcttgcaccaaatgccacagagaa-caaaagtattacacaataaaaagagatgttgtgccgtttcaggatgaccacaaccagcaattaac 211  Q
    |||||| |||||| ||||||||||||| |||||| ||||||||| |||||||||||| ||||||||||||| ||| |||||||||||||||||||    |    
T  6264461 accaatacaatctcgcaccaaatgccatagagaatcaaaagtatcacacaataaaaaaagatgttgtgccgattcgggatgaccacaaccagcaa----c 6264366  T
Q  212 acacgaggacatgtcgggcgacaacacccgtcttgcaatcaaatttgtctttgttggtaaacgatcacggatgaacctccacgcgaaaacggaaac 307  Q
    | ||||||||||||| ||||||||||||||||| | ||||||||||||| |||| ||||||| |||||| |||| |||||| ||||||||||||||    
T  6264365 atacgaggacatgtcaggcgacaacacccgtctagaaatcaaatttgtccttgtcggtaaacaatcacgaatgagcctccatgcgaaaacggaaac 6264270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 113 - 307
Target Start/End: Original strand, 34480833 - 34481024
Alignment:
Q  113 accaatccaatcttgcaccaaatgccacagagaacaaaag-tattacacaataaaaagagatgttgtgccgtttcaggatgaccacaaccagcaattaac 211  Q
    ||||||||||||| |||||||||||||||  |||| |||| ||| |||| |||| || || ||||| |||| |||||||| |||||  |||||||    |    
T  34480833 accaatccaatctcgcaccaaatgccacatcgaaccaaaggtatcacacgataagaaaaggtgttgggccgattcaggataaccacccccagcaa----c 34480928  T
Q  212 acacgaggacatgtcgggcgacaacacccgtcttgcaatcaaatttgtctttgttggtaaacgatcacggatgaacctccacgcgaaaacggaaac 307  Q
    |||||| |||||||| ||||| | ||||||||| | ||||||||||  | |||| |||||||| ||||| | || ||||||||| |||||||||||    
T  34480929 acacgaagacatgtcaggcgatagcacccgtctagaaatcaaatttaaccttgtcggtaaacggtcacgaaggagcctccacgcaaaaacggaaac 34481024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 114 - 277
Target Start/End: Complemental strand, 10487182 - 10487022
Alignment:
Q  114 ccaatccaatcttgcaccaaatgccacagagaac-aaaagtattacacaataaaaagagatgttgtgccgtttcaggatgaccacaaccagcaattaaca 212  Q
    |||||||||||  |||||| || ||| || |||| |||||| |||||||| |||||||||||||| |||||||| |||||||| ||||||||     |||    
T  10487182 ccaatccaatcacgcaccatataccaaagcgaaccaaaagtgttacacaacaaaaagagatgttgggccgtttccggatgaccgcaaccagc----gaca 10487087  T
Q  213 cacgaggacatgtcgggcgacaacacccgtcttgcaatcaaatttgtctttgttggtaaacgatc 277  Q
    ||  ||||||||||   ||| |||||||| |  ||||||||||| |||||||| |||||||||||    
T  10487086 cataaggacatgtcattcgataacacccgacgagcaatcaaattagtctttgtcggtaaacgatc 10487022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 12 - 70
Target Start/End: Original strand, 34480721 - 34480779
Alignment:
Q  12 cacatagaaatcacataagttgcataaaagaacgtctagcaacaccatcacctgtcaaa 70  Q
    |||||||||  || ||||||||||||||||||||||||||| ||||| |||||| ||||    
T  34480721 cacatagaagccatataagttgcataaaagaacgtctagcagcaccaccacctgccaaa 34480779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 12 - 81
Target Start/End: Complemental strand, 6264573 - 6264504
Alignment:
Q  12 cacatagaaatcacataagttgcataaaagaacgtctagcaacaccatcacctgtcaaatgaataaactg 81  Q
    |||||||||  || || |||||||||||||||||| ||||| ||||| |||||||||||||| | |||||    
T  6264573 cacatagaagccatattagttgcataaaagaacgtttagcagcaccaccacctgtcaaatgagtgaactg 6264504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 12 - 81
Target Start/End: Complemental strand, 15500021 - 15499952
Alignment:
Q  12 cacatagaaatcacataagttgcataaaagaacgtctagcaacaccatcacctgtcaaatgaataaactg 81  Q
    |||||||||  || || ||||||| |||||| ||||||||||||||| |||||| ||||||| |||||||    
T  15500021 cacatagaagccaaatgagttgcaaaaaagaccgtctagcaacaccaccacctgacaaatgagtaaactg 15499952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 133; Significance: 4e-69; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 29 - 301
Target Start/End: Original strand, 14119547 - 14119832
Alignment:
Q  29 agttgcataaaagaacgtctagcaacaccatcacctgtcaaatgaataaactgnnnnnnnntgatcggaaatattatctgcgtca--------------- 113  Q
    |||||||||||||| ||||||||||||||| |||||||||||||| |||||||        |||||||||||||||||||||||                    
T  14119547 agttgcataaaagaccgtctagcaacaccaccacctgtcaaatgagtaaactgtaaaaaa-tgatcggaaatattatctgcgtccaccccatagcaacca 14119645  T
Q  114 --ccaatccaatcttgcaccaaatgccacagagaac-aaaagtattacacaataaaaagagatgttgtgccgtttcaggatgaccacaaccagcaattaa 210  Q
      |||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||| |||| ||||||||||||||||||| |||        
T  14119646 atccaatccaatctcgcaccaaatgccacagagaaccaaaagtattacacaataaaaagagatgttgcgccgattcaggatgaccacaaccaacaa---- 14119741  T
Q  211 cacacgaggacatgtcgggcgacaacacccgtcttgcaatcaaatttgtctttgttggtaaacgatcacggatgaacctccacgcgaaaac 301  Q
    |||||||||||||||| ||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||| |||||||||||||||    
T  14119742 cacacgaggacatgtcaggcgacaacacccgtctagcaatcaaatttgtccttgttggtaaacgatcacggatgagcctccacgcgaaaac 14119832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 113 - 307
Target Start/End: Original strand, 3692504 - 3692695
Alignment:
Q  113 accaatccaatcttgcaccaaatgccacagagaa-caaaagtattacacaataaaaagagatgttgtgccgtttcaggatgaccacaaccagcaattaac 211  Q
    |||||||||| || |||||||||||||||||||  ||||||||| || ||||||||| |||||| |||||| ||||||||||||||| |||||||    |    
T  3692504 accaatccaagctcgcaccaaatgccacagagagtcaaaagtatcacgcaataaaaatagatgtcgtgccgattcaggatgaccacagccagcaa----c 3692599  T
Q  212 acacgaggacatgtcgggcgacaacacccgtcttgcaatcaaatttgtctttgttggtaaacgatcacggatgaacctccacgcgaaaacggaaac 307  Q
    ||||||||||||||| ||||||||||||||||| ||||||||||||||| ||||||||||||||||||||| || || || ||| |||||| ||||    
T  3692600 acacgaggacatgtccggcgacaacacccgtctagcaatcaaatttgtccttgttggtaaacgatcacggaggagccgccgcgcaaaaacgaaaac 3692695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 117 - 307
Target Start/End: Complemental strand, 32353556 - 32353369
Alignment:
Q  117 atccaatcttgcaccaaatgccacagagaac-aaaagtattacacaataaaaagagatgttgtgccgtttcaggatgaccacaaccagcaattaacacac 215  Q
    ||||||||| ||||||||||||||||||||| |||||||| ||||| |||||| |||||| |  ||| |||||||||||||||  ||||||    ||| |    
T  32353556 atccaatctcgcaccaaatgccacagagaaccaaaagtatcacacattaaaaatagatgtcgatccgattcaggatgaccacattcagcaa----cactc 32353461  T
Q  216 gaggacatgtcgggcgacaacacccgtcttgcaatcaaatttgtctttgttggtaaacgatcacggatgaacctccacgcgaaaacggaaac 307  Q
    || |||||||| ||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||| ||||||||| |||||||||||    
T  32353460 gaagacatgtcaggcgacaacacccgtctagcaatcaaatttgtccttgttggtaaacgatcacggatgagcctccacgcaaaaacggaaac 32353369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 117 - 307
Target Start/End: Complemental strand, 48073690 - 48073503
Alignment:
Q  117 atccaatcttgcaccaaatgccacagagaac-aaaagtattacacaataaaaagagatgttgtgccgtttcaggatgaccacaaccagcaattaacacac 215  Q
    ||||||||  ||||||||||||||||||||| |||||||| |||||||||||| |||||| | |||| ||||||||||||  | |||||    |||||||    
T  48073690 atccaatcacgcaccaaatgccacagagaaccaaaagtatcacacaataaaaatagatgtcgagccgattcaggatgaccgtagccagc----aacacac 48073595  T
Q  216 gaggacatgtcgggcgacaacacccgtcttgcaatcaaatttgtctttgttggtaaacgatcacggatgaacctccacgcgaaaacggaaac 307  Q
    || |||||||| | ||||||||||||||  ||||||||||||||| |||||| |||||||||||||| || ||||||||| |||||||||||    
T  48073594 gaagacatgtcagacgacaacacccgtcgagcaatcaaatttgtccttgttgttaaacgatcacggaggagcctccacgcaaaaacggaaac 48073503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 114 - 307
Target Start/End: Original strand, 37530444 - 37530634
Alignment:
Q  114 ccaatccaatcttgcaccaaatgccacagagaacaaaag-tattacacaataaaaagagatgttgtgccgtttcaggatgaccacaaccagcaattaaca 212  Q
    |||||||||||| |||||||||||||||| |||| |||| ||| |||||||||||| || |||||||||| |||||||||||||||||||||    |||     
T  37530444 ccaatccaatctcgcaccaaatgccacagcgaaccaaaggtatcacacaataaaaaaaggtgttgtgccgattcaggatgaccacaaccagc----aacg 37530539  T
Q  213 cacgaggacatgtcgggcgacaacacccgtcttgcaatcaaatttgtctttgttggtaaacgatcacggatgaacctccacgcgaaaacggaaac 307  Q
    |||||||||||||| ||||| | ||||||||| | ||||||||| ||| |||| | |||||| ||||| | || ||||||||| |||||||||||    
T  37530540 cacgaggacatgtcaggcgatagcacccgtctagaaatcaaattcgtccttgtcgataaacggtcacgaaggagcctccacgcaaaaacggaaac 37530634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 113 - 277
Target Start/End: Original strand, 36929044 - 36929205
Alignment:
Q  113 accaatccaatcttgcaccaaatgccacagagaac-aaaagtattacacaataaaaagagatgttgtgccgtttcaggatgaccacaaccagcaattaac 211  Q
    ||||||||||||  |||||| |||||| || |||| |||||| |||||||| |||||||||||||| ||| ||||||||||||| ||||||||     ||    
T  36929044 accaatccaatcacgcaccatatgccaaagcgaaccaaaagtgttacacaacaaaaagagatgttgagccatttcaggatgaccgcaaccagc----gac 36929139  T
Q  212 acacgaggacatgtcgggcgacaacacccgtcttgcaatcaaatttgtctttgttggtaaacgatc 277  Q
    |||  ||||||| || ||| ||||||| ||||  ||||||||||| ||||| |||||||| |||||    
T  36929140 acataaggacatatcaggcaacaacactcgtcgagcaatcaaattagtcttcgttggtaaccgatc 36929205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 113 - 277
Target Start/End: Complemental strand, 48265981 - 48265820
Alignment:
Q  113 accaatccaatcttgcaccaaatgccacagagaa-caaaagtattacacaataaaaagagatgttgtgccgtttcaggatgaccacaaccagcaattaac 211  Q
    ||||||||||||  ||||||||||||| || ||| ||||||| |||||||| ||||| |||| ||| |||||||| |||||||| |||| |||     ||    
T  48265981 accaatccaatcacgcaccaaatgccaaagcgaaccaaaagtgttacacaacaaaaaaagatattgggccgtttctggatgaccgcaactagc----gac 48265886  T
Q  212 acacgaggacatgtcgggcgacaacacccgtcttgcaatcaaatttgtctttgttggtaaacgatc 277  Q
    |||  ||||||||||   ||| ||||||||||  ||||||||||| |||||||| |||||||||||    
T  48265885 acataaggacatgtcattcgataacacccgtcgagcaatcaaattagtctttgtcggtaaacgatc 48265820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 147 - 307
Target Start/End: Original strand, 36305696 - 36305852
Alignment:
Q  147 caaaagtattacacaataaaaagagatgttgtgccgtttcaggatgaccacaaccagcaattaacacacgaggacatgtcgggcgacaacacccgtcttg 246  Q
    ||||||| |||||||| |||||||||||||| ||||||||||||||| | ||||||||     |||||  ||||||| || |||||||||||| |||  |    
T  36305696 caaaagtgttacacaacaaaaagagatgttgagccgtttcaggatgatcgcaaccagc----gacacataaggacatatcaggcgacaacacctgtcgag 36305791  T
Q  247 caatcaaatttgtctttgttggtaaacgatcacggatgaacctccacgcgaaaacggaaac 307  Q
    |||||||||| |||||  ||||||| ||||| | || ||  |||||||| ||||| |||||    
T  36305792 caatcaaattagtcttcattggtaaccgatccctgaggagtctccacgcaaaaactgaaac 36305852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 8 - 70
Target Start/End: Original strand, 38231448 - 38231510
Alignment:
Q  8 caggcacatagaaatcacataagttgcataaaagaacgtctagcaacaccatcacctgtcaaa 70  Q
    ||||||||||||| ||| || |||||||||||||||||||||||||||||| |||||||||||    
T  38231448 caggcacatagaagtcatattagttgcataaaagaacgtctagcaacaccaccacctgtcaaa 38231510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 8 - 73
Target Start/End: Original strand, 3692388 - 3692453
Alignment:
Q  8 caggcacatagaaatcacataagttgcataaaagaacgtctagcaacaccatcacctgtcaaatga 73  Q
    |||||||||||||  || || |||||||||||||||||||||||| ||||| ||||||||||||||    
T  3692388 caggcacatagaagccatattagttgcataaaagaacgtctagcagcaccaccacctgtcaaatga 3692453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 113 - 277
Target Start/End: Original strand, 21528038 - 21528199
Alignment:
Q  113 accaatccaatcttgcaccaaatgccacagagaac-aaaagtattacacaataaaaagagatgttgtgccgtttcaggatgaccacaaccagcaattaac 211  Q
    ||||||||||||  |||||| || ||| || |||| |||||| |||||||| |||||||||||||| |||||||| ||||||||  |||||||      |    
T  21528038 accaatccaatcacgcaccatataccaaagcgaaccaaaagtgttacacaacaaaaagagatgttgggccgtttccggatgaccgtaaccagc----ggc 21528133  T
Q  212 acacgaggacatgtcgggcgacaacacccgtcttgcaatcaaatttgtctttgttggtaaacgatc 277  Q
    |||  ||||||||||   ||| |||||||| |  ||||||||||| |||||||| |||||||||||    
T  21528134 acataaggacatgtcattcgataacacccgacgagcaatcaaattagtctttgtcggtaaacgatc 21528199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 8 - 81
Target Start/End: Original strand, 21527922 - 21527995
Alignment:
Q  8 caggcacatagaaatcacataagttgcataaaagaacgtctagcaacaccatcacctgtcaaatgaataaactg 81  Q
    |||||||| ||||  || |||||||||||||||||||||||||    | || ||||||||||||||||||||||    
T  21527922 caggcacagagaagccaaataagttgcataaaagaacgtctagacttagcaccacctgtcaaatgaataaactg 21527995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 8 - 73
Target Start/End: Complemental strand, 32353676 - 32353611
Alignment:
Q  8 caggcacatagaaatcacataagttgcataaaagaacgtctagcaacaccatcacctgtcaaatga 73  Q
    |||||||| ||||  || || |||||||||||||||||||||||| ||||| ||||| ||||||||    
T  32353676 caggcacaaagaagccagattagttgcataaaagaacgtctagcagcaccaccacctatcaaatga 32353611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 26 - 71
Target Start/End: Original strand, 36305563 - 36305608
Alignment:
Q  26 ataagttgcataaaagaacgtctagcaacaccatcacctgtcaaat 71  Q
    ||||||||||||||||||||||||| |||| || ||||||||||||    
T  36305563 ataagttgcataaaagaacgtctagaaacagcaccacctgtcaaat 36305608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 26 - 71
Target Start/End: Original strand, 36928946 - 36928991
Alignment:
Q  26 ataagttgcataaaagaacgtctagcaacaccatcacctgtcaaat 71  Q
    ||||||||||||||||||||||||| |||| || ||||||||||||    
T  36928946 ataagttgcataaaagaacgtctagaaacagcaccacctgtcaaat 36928991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 73
Target Start/End: Original strand, 37530329 - 37530392
Alignment:
Q  12 cacatagaaatcacataagttgcataaaagaacgtctagc--aacaccatcacctgtcaaatga 73  Q
    |||||||||  || || |||||||||||||||||||||||  ||||||| ||||||||||||||    
T  37530329 cacatagaagccatattagttgcataaaagaacgtctagcagaacaccaccacctgtcaaatga 37530392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 81
Target Start/End: Complemental strand, 48073811 - 48073738
Alignment:
Q  8 caggcacatagaaatcacataagttgcataaaagaacgtctagcaacaccatcacctgtcaaatgaataaactg 81  Q
    |||||||| ||||  || || ||||||||||||||||||||| || ||||| ||||| |||||||| | |||||    
T  48073811 caggcacaaagaagccagattagttgcataaaagaacgtctaacagcaccaccacctatcaaatgagtgaactg 48073738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 126; Significance: 5e-65; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 29 - 304
Target Start/End: Original strand, 25317636 - 25317919
Alignment:
Q  29 agttgcataaaagaacgtctagcaacaccatcacctgtcaaatgaataaactgnnnnnnnntgatcggaaatattatctgcgtca------------cca 116  Q
    |||||||||||||||||||||||||||||| |||||||||||||| |||||||        |||||| |||||||||||| |||             |||    
T  25317636 agttgcataaaagaacgtctagcaacaccaccacctgtcaaatgagtaaactgtaaaaaa-tgatcgaaaatattatctgtgtccaccccatagcagcca 25317734  T
Q  117 atccaatcttgcaccaaatgccacagagaac-aaaagtattacacaataaaaagagatgttgtgccgtttcaggatgaccacaaccagcaattaacacac 215  Q
    ||||||||| |||||| |||||||||||||| |||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||    |||||    
T  25317735 atccaatctcgcaccagatgccacagagaaccaaaagtattacacaataaaaagagatgttgcgccgattcaggatgaccacaaccagcaa----cacac 25317830  T
Q  216 gaggacatgtcgggcgacaacacccgtcttgcaatcaaatttgtctttgttggtaaacgatcacggatgaacctccacgcgaaaacgga 304  Q
    ||||||||||| ||||||||||||||||| ||||||||||| ||| || ||||||||||||| ||||||| ||||||||| ||||||||    
T  25317831 gaggacatgtcaggcgacaacacccgtctagcaatcaaattagtcctttttggtaaacgatctcggatgagcctccacgcaaaaacgga 25317919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 29 - 304
Target Start/End: Original strand, 26205130 - 26205413
Alignment:
Q  29 agttgcataaaagaacgtctagcaacaccatcacctgtcaaatgaataaactgnnnnnnnntgatcggaaatattatctgcgtca------------cca 116  Q
    |||||||||||||||||||||||||||||| |||||||||||||| |||||||        |||||| |||||||||||| |||             |||    
T  26205130 agttgcataaaagaacgtctagcaacaccaccacctgtcaaatgagtaaactgtaaaaaa-tgatcgaaaatattatctgtgtccaccccatagcagcca 26205228  T
Q  117 atccaatcttgcaccaaatgccacagagaac-aaaagtattacacaataaaaagagatgttgtgccgtttcaggatgaccacaaccagcaattaacacac 215  Q
    ||||||||| |||||| |||||||||||||| |||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||    |||||    
T  26205229 atccaatctcgcaccagatgccacagagaaccaaaagtattacacaataaaaagagatgttgcgccgattcaggatgaccacaaccagcaa----cacac 26205324  T
Q  216 gaggacatgtcgggcgacaacacccgtcttgcaatcaaatttgtctttgttggtaaacgatcacggatgaacctccacgcgaaaacgga 304  Q
    ||||||||||| ||||||||||||||||| ||||||||||| ||| || ||||||||||||| ||||||| ||||||||| ||||||||    
T  26205325 gaggacatgtcaggcgacaacacccgtctagcaatcaaattagtcctttttggtaaacgatctcggatgagcctccacgcaaaaacgga 26205413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 8 - 304
Target Start/End: Original strand, 15673586 - 15673890
Alignment:
Q  8 caggcacatagaaatcacataagttgcataaaagaacgtctagcaacaccatcacctgtcaaatgaataaactgnnnnnnnntgatcggaaatattatct 107  Q
    |||||||||||||  || || |||||||||||||||||||||||||||||| |||||||||||||| | |||||        ||||| ||||||||||||    
T  15673586 caggcacatagaagccaaattagttgcataaaagaacgtctagcaacaccaccacctgtcaaatgagtgaactgtaaaaaa-tgatctgaaatattatct 15673684  T
Q  108 gcgtc------------accaatccaatcttgcaccaaatgccacagagaac-aaaagtattacacaataaaaagagatgttgtgccgtttcaggatgac 194  Q
    | |||            ||||||||||||| ||||||||||||||||||||| |||||||| |||||||||||| | |||| |||||| |||||||||||    
T  15673685 gtgtccaccccatagcaaccaatccaatctcgcaccaaatgccacagagaaccaaaagtatcacacaataaaaataaatgtcgtgccgattcaggatgac 15673784  T
Q  195 cacaaccagcaattaacacacgaggacatgtcgggcgacaacacccgtcttgcaatcaaatttgtctttgttggtaaacgatcacggatgaacctccacg 294  Q
    ||||||||||||    |||| ||||||||||| ||||||||||||| ||| ||||||||||||||| |||||||||||||||| ||||||| ||||||||    
T  15673785 cacaaccagcaa----cacaagaggacatgtcaggcgacaacacccttctagcaatcaaatttgtccttgttggtaaacgatcccggatgagcctccacg 15673880  T
Q  295 cgaaaacgga 304  Q
    | ||||||||    
T  15673881 caaaaacgga 15673890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 114 - 307
Target Start/End: Complemental strand, 23347728 - 23347538
Alignment:
Q  114 ccaatccaatcttgcaccaaatgccacagagaac-aaaagtattacacaataaaaagagatgttgtgccgtttcaggatgaccacaaccagcaattaaca 212  Q
    |||||||||||| ||||||||||||||||||||| |||||||| |||||||||||| |||||| |||||| |||||||||||||||||||||||    ||    
T  23347728 ccaatccaatctcgcaccaaatgccacagagaaccaaaagtatcacacaataaaaatagatgtcgtgccgattcaggatgaccacaaccagcaa----ca 23347633  T
Q  213 cacgaggacatgtcgggcgacaacacccgtcttgcaatcaaatttgtctttgttggtaaacgatcacggatgaacctccacgcgaaaacggaaac 307  Q
    |||||||||||||| |||||   ||||||||| ||||||||||||||| |||||||||||||||||||||||| ||||||||| |||||| ||||    
T  23347632 cacgaggacatgtcaggcgatggcacccgtctagcaatcaaatttgtccttgttggtaaacgatcacggatgagcctccacgcaaaaacgaaaac 23347538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 12 - 307
Target Start/End: Complemental strand, 8873201 - 8872898
Alignment:
Q  12 cacatagaaatcacataagttgcataaaagaacgtctagcaacaccatcacctgtcaaatgaataaactgnnnnnnnntgatcggaaatattatctgcgt 111  Q
    |||||||||  || || ||||||||||||||||||||| || ||||| |||||||||||||| | |||||        |||||| |||||||||||||||    
T  8873201 cacatagaagccatattagttgcataaaagaacgtctaacagcaccaccacctgtcaaatgagtgaactgtaaaaaa-tgatcgaaaatattatctgcgt 8873103  T
Q  112 c------------accaatccaatcttgcaccaaatgccacagagaac-aaaagtattacacaataaaaagagatgttgtgccgtttcaggatgaccaca 198  Q
    |            | ||||||||||| |||||||||| |||||||||| |||||| | ||||||||||||  |||| ||||||| ||| |||||||||||    
T  8873102 ccaccccatagcaagcaatccaatctcgcaccaaatgtcacagagaaccaaaagtgtcacacaataaaaaaggatgatgtgccgattcgggatgaccaca 8873003  T
Q  199 accagcaattaacacacgaggacatgtcgggcgacaacacccgtcttgcaatcaaatttgtctttgttggtaaacgatcacggatgaacctccacgcgaa 298  Q
    ||||||||    | |||||||||||||| ||||||||||||||||| | ||||||||||||| |||| |||||||||||||  |||| ||||||||||||    
T  8873002 accagcaa----cgcacgaggacatgtcaggcgacaacacccgtctagaaatcaaatttgtccttgtcggtaaacgatcacaaatgagcctccacgcgaa 8872907  T
Q  299 aacggaaac 307  Q
    |||||||||    
T  8872906 aacggaaac 8872898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 113 - 282
Target Start/End: Original strand, 33629974 - 33630140
Alignment:
Q  113 accaatccaatcttgcaccaaatgccacagagaac-aaaagtattacacaataaaaagagatgttgtgccgtttcaggatgaccacaaccagcaattaac 211  Q
    ||||||||||||  |||||| |||||| || |||| |||||| |||||||| |||||||||||||| |||||||| |||||||| ||||||||     ||    
T  33629974 accaatccaatcacgcaccatatgccaaagcgaaccaaaagtgttacacaacaaaaagagatgttgggccgtttccggatgaccgcaaccagc----gac 33630069  T
Q  212 acacgaggacatgtcgggcgacaacacccgtcttgcaatcaaatttgtctttgttggtaaacgatcacgga 282  Q
    |||  ||||||||||   ||| ||||||||||  ||||||||||| |||||||| ||||||||||| ||||    
T  33630070 acataaggacatgtcattcgataacacccgtcgagcaatcaaattagtctttgtcggtaaacgatctcgga 33630140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 113 - 278
Target Start/End: Original strand, 1682917 - 1683079
Alignment:
Q  113 accaatccaatcttgcaccaaatgccacagagaac-aaaagtattacacaataaaaagagatgttgtgccgtttcaggatgaccacaaccagcaattaac 211  Q
    ||||||||||||  |||||| ||| || || |||| |||||| |||||||| |||||||||||||| |||||||| | |||||| ||||||||     ||    
T  1682917 accaatccaatcacgcaccatatgtcaaagcgaaccaaaagtgttacacaacaaaaagagatgttgggccgtttccgaatgaccgcaaccagc----gac 1683012  T
Q  212 acacgaggacatgtcgggcgacaacacccgtcttgcaatcaaatttgtctttgttggtaaacgatca 278  Q
    |||  ||||||||||   ||| ||||||||||  ||||||||||| |||||||| ||||||||||||    
T  1683013 acataaggacatgtcattcgataacacccgtcgagcaatcaaattagtctttgtcggtaaacgatca 1683079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 12 - 73
Target Start/End: Original strand, 13755230 - 13755291
Alignment:
Q  12 cacatagaaatcacataagttgcataaaagaacgtctagcaacaccatcacctgtcaaatga 73  Q
    ||||||||| ||| || |||||||||||||||||||||||| ||||| ||||||||||||||    
T  13755230 cacatagaagtcatattagttgcataaaagaacgtctagcagcaccaccacctgtcaaatga 13755291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 113 - 187
Target Start/End: Original strand, 19349144 - 19349219
Alignment:
Q  113 accaatccaatcttgcaccaaatgccacagagaacaaaa-gtattacacaataaaaagagatgttgtgccgtttca 187  Q
    |||||| ||||||  |||||||||||||||| ||| ||| |||||||||||||||||||||||||| |||| ||||    
T  19349144 accaattcaatctcacaccaaatgccacagaaaaccaaatgtattacacaataaaaagagatgttgcgccgattca 19349219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 8 - 78
Target Start/End: Original strand, 19349026 - 19349096
Alignment:
Q  8 caggcacatagaaatcacataagttgcataaaagaacgtctagcaacaccatcacctgtcaaatgaataaa 78  Q
    |||||||| ||||  || || |||||||||||||| ||||||||||||||| |||||||||||||| ||||    
T  19349026 caggcacagagaagccatattagttgcataaaagaccgtctagcaacaccaccacctgtcaaatgagtaaa 19349096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 8 - 81
Target Start/End: Complemental strand, 23347845 - 23347772
Alignment:
Q  8 caggcacatagaaatcacataagttgcataaaagaacgtctagcaacaccatcacctgtcaaatgaataaactg 81  Q
    |||||||||| ||  || || |||||||||||||||||||||||||||||| | |||||||||||| | |||||    
T  23347845 caggcacataaaagccatattagttgcataaaagaacgtctagcaacaccaccgcctgtcaaatgagtgaactg 23347772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 113 - 204
Target Start/End: Original strand, 19256922 - 19257013
Alignment:
Q  113 accaatccaatcttgcaccaaatgccacagagaac-aaaagtattacacaataaaaagagatgttgtgccgtttcaggatgaccacaaccagc 204  Q
    ||||||||||||  |||||| |||||| | ||||| ||||||||||||||  ||||| || |||||||||||||||||| ||||  |||||||    
T  19256922 accaatccaatcacgcaccatatgccataaagaaccaaaagtattacacacaaaaaa-aggtgttgtgccgtttcaggaagaccgtaaccagc 19257013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 57
Target Start/End: Original strand, 1682807 - 1682856
Alignment:
Q  8 caggcacatagaaatcacataagttgcataaaagaacgtctagcaacacc 57  Q
    |||||||| ||||  || ||||||||||||||||||||||||||| ||||    
T  1682807 caggcacagagaagccaaataagttgcataaaagaacgtctagcaccacc 1682856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 121; Significance: 5e-62; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 8 - 302
Target Start/End: Original strand, 13549885 - 13550187
Alignment:
Q  8 caggcacatagaaatcacataagttgcataaaagaacgtctagcaacaccatcacctgtcaaatgaataaactgnnnnnnnntgatcggaaatattatct 107  Q
    |||||||| ||||  || ||||||||||||||||||||||||||||||||| |||||||||||||| |||||||        |||||||||||||||| |    
T  13549885 caggcacaaagaagccaaataagttgcataaaagaacgtctagcaacaccaccacctgtcaaatgagtaaactgtaaaaaa-tgatcggaaatattatat 13549983  T
Q  108 gcgtc------------accaatccaatcttgcaccaaatgccacagagaac-aaaagtattacacaataaaaagagatgttgtgccgtttcaggatgac 194  Q
    | |||            ||||||||||||  |||||| |||||||||||| | ||||||||||||||||||||||||||||||  ||| |||||||||||    
T  13549984 gtgtccaccccatagcaaccaatccaatcacgcaccagatgccacagagagccaaaagtattacacaataaaaagagatgttgcaccgattcaggatgac 13550083  T
Q  195 cacaaccagcaattaacacacgaggacatgtcgggcgacaacacccgtcttgcaatcaaatttgtctttgttggtaaacgatcacggatgaacctccacg 294  Q
    |||||||||    |||||||||||||||||||  |||||||||||||||| ||||||||||| ||| |||||||||||||||| ||||||| |||||||     
T  13550084 cacaaccag----taacacacgaggacatgtcatgcgacaacacccgtctagcaatcaaattagtccttgttggtaaacgatctcggatgagcctccaca 13550179  T
Q  295 cgaaaacg 302  Q
    ||||||||    
T  13550180 cgaaaacg 13550187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 113 - 304
Target Start/End: Original strand, 22052504 - 22052692
Alignment:
Q  113 accaatccaatcttgcaccaaatgccacagagaac-aaaagtattacacaataaaaagagatgttgtgccgtttcaggatgaccacaaccagcaattaac 211  Q
    ||||||||||||  ||||||||||||||||||||| |||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||    |    
T  22052504 accaatccaatcacgcaccaaatgccacagagaaccaaaagtattacacaataaaaagagatgttgcgccgattcaggatgaccacaaccagcaa----c 22052599  T
Q  212 acacgaggacatgtcgggcgacaacacccgtcttgcaatcaaatttgtctttgttggtaaacgatcacggatgaacctccacgcgaaaacgga 304  Q
    |||||||||||| || |||  |||||||| ||| ||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||    
T  22052600 acacgaggacatatcaggcaccaacacccttctagcaatcaaatttgtccttgttggtaaacgatcacggatgagcctccacgcgaaaacgga 22052692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 127 - 307
Target Start/End: Original strand, 43627390 - 43627567
Alignment:
Q  127 gcaccaaatgccacagagaac-aaaagtattacacaataaaaagagatgttgtgccgtttcaggatgaccacaaccagcaattaacacacgaggacatgt 225  Q
    ||||||||||||||| ||||| |||||||| |||||||||||| |||||| | |||| |||||||||||||||| ||||||    ||| ||| |||||||    
T  43627390 gcaccaaatgccacaaagaaccaaaagtatcacacaataaaaatagatgtcgagccgattcaggatgaccacaatcagcaa----cacgcgaagacatgt 43627485  T
Q  226 cgggcgacaacacccgtcttgcaatcaaatttgtctttgttggtaaacgatcacggatgaacctccacgcgaaaacggaaac 307  Q
    | ||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||| ||||||||| |||||||||||    
T  43627486 caggcgacaacacccgtctagcaatcaaatttgtccttgttggtaaacgatcacggatgagcctccacgcaaaaacggaaac 43627567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 128 - 302
Target Start/End: Complemental strand, 31085885 - 31085714
Alignment:
Q  128 caccaaatgccacagagaac-aaaagtattacacaataaaaagagatgttgtgccgtttcaggatgaccacaaccagcaattaacacacgaggacatgtc 226  Q
    |||||||||||| || |||| ||||||||| ||||||||||||||||||||||||||||||||||| || || |||||||    ||||||||||||||||    
T  31085885 caccaaatgccaaagcgaaccaaaagtatttcacaataaaaagagatgttgtgccgtttcaggatgtccgcacccagcaa----cacacgaggacatgtc 31085790  T
Q  227 gggcgacaacacccgtcttgcaatcaaatttgtctttgttggtaaacgatcacggatgaacctccacgcgaaaacg 302  Q
     | ||||| ||||||||| |||||||||||||||||| ||||||||||||||||||||| ||||||||| ||||||    
T  31085789 agacgacagcacccgtctagcaatcaaatttgtctttcttggtaaacgatcacggatgagcctccacgcaaaaacg 31085714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 117 - 307
Target Start/End: Original strand, 33547753 - 33547940
Alignment:
Q  117 atccaatcttgcaccaaatgccacagagaac-aaaagtattacacaataaaaagagatgttgtgccgtttcaggatgaccacaaccagcaattaacacac 215  Q
    ||||||||  ||||||||||||||||||||| |||||||| |||||||||||| |||||| | |||| |||||||||||| || |||||||    |||||    
T  33547753 atccaatcacgcaccaaatgccacagagaaccaaaagtatcacacaataaaaatagatgtcgagccgattcaggatgaccgcagccagcaa----cacac 33547848  T
Q  216 gaggacatgtcgggcgacaacacccgtcttgcaatcaaatttgtctttgttggtaaacgatcacggatgaacctccacgcgaaaacggaaac 307  Q
     | |||||||| | ||||||||||||||  ||||||||||||||| |||||| |||||||||||||| || ||||||||| |||||||||||    
T  33547849 aaagacatgtcagacgacaacacccgtcgagcaatcaaatttgtccttgttgataaacgatcacggaggagcctccacgcaaaaacggaaac 33547940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 113 - 307
Target Start/End: Complemental strand, 9949527 - 9949336
Alignment:
Q  113 accaatccaatcttgcaccaaatgccacagagaacaaaag-tattacacaataaaaagagatgttgtgccgtttcaggatgaccacaaccagcaattaac 211  Q
    ||||||||||||| |||||||||||||||  |||| |||| ||| |||| |||| || || ||||| |||| ||||||||||||||| |||||||    |    
T  9949527 accaatccaatctcgcaccaaatgccacatcgaaccaaaggtatcacacgataagaaaaggtgttgggccgattcaggatgaccacacccagcaa----c 9949432  T
Q  212 acacgaggacatgtcgggcgacaacacccgtcttgcaatcaaatttgtctttgttggtaaacgatcacggatgaacctccacgcgaaaacggaaac 307  Q
    |||||| |||||||| ||||| | ||||||||| | ||||||||||  | |||| |||||||| ||||| | || ||||||||| |||||||||||    
T  9949431 acacgaagacatgtcaggcgatagcacccgtctagaaatcaaatttaaccttgtcggtaaacggtcacgaaggagcctccacgcaaaaacggaaac 9949336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 152 - 301
Target Start/End: Complemental strand, 26180149 - 26180005
Alignment:
Q  152 gtattacacaataaaaagagatgttgtgccgtttcaggatgaccacaaccagcaattaacacacgaggacatgtcgggcgacaacacccgtcttgcaatc 251  Q
    |||||||||||||||||||| ||||||| |||||||||||| |  || ||||||||    |||  || | ||||| ||||||| ||||| ||| |||||     
T  26180149 gtattacacaataaaaagaggtgttgtgtcgtttcaggatgtctgcacccagcaat----acaaaagcaaatgtcaggcgacagcaccc-tctagcaatt 26180055  T
Q  252 aaatttgtctttgttggtaaacgatcacggatgaacctccacgcgaaaac 301  Q
    |||||| ||||||||||||| ||||||||||||| | ||||||| |||||    
T  26180054 aaatttatctttgttggtaaccgatcacggatgagcatccacgcaaaaac 26180005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 8 - 73
Target Start/End: Original strand, 43627260 - 43627325
Alignment:
Q  8 caggcacatagaaatcacataagttgcataaaagaacgtctagcaacaccatcacctgtcaaatga 73  Q
    |||||||| ||||  || ||||||||||||||||||||||||||| ||||| ||||| ||||||||    
T  43627260 caggcacaaagaagccatataagttgcataaaagaacgtctagcagcaccaccacctatcaaatga 43627325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 12 - 81
Target Start/End: Original strand, 22052392 - 22052461
Alignment:
Q  12 cacatagaaatcacataagttgcataaaagaacgtctagcaacaccatcacctgtcaaatgaataaactg 81  Q
    |||||||||  || || ||||||| |||||| ||||||||||||||| |||||| ||||||| |||||||    
T  22052392 cacatagaagccaaatgagttgcaaaaaagaccgtctagcaacaccaccacctgacaaatgagtaaactg 22052461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 8 - 73
Target Start/End: Original strand, 33547633 - 33547698
Alignment:
Q  8 caggcacatagaaatcacataagttgcataaaagaacgtctagcaacaccatcacctgtcaaatga 73  Q
    |||||||| ||||  || || |||||||||||||||||||||||| ||||| ||||| ||||||||    
T  33547633 caggcacaaagaagccagattagttgcataaaagaacgtctagcagcaccaccacctatcaaatga 33547698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 29 - 81
Target Start/End: Complemental strand, 31085995 - 31085943
Alignment:
Q  29 agttgcataaaagaacgtctagcaacaccatcacctgtcaaatgaataaactg 81  Q
    ||||||||||||||||||||||||  |||| |||||| ||||||| |||||||    
T  31085995 agttgcataaaagaacgtctagcattaccaccacctgacaaatgagtaaactg 31085943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 12 - 63
Target Start/End: Complemental strand, 9949639 - 9949588
Alignment:
Q  12 cacatagaaatcacataagttgcataaaagaacgtctagcaacaccatcacc 63  Q
    |||||||||  || ||||||||||||||||||||||||||| ||||| ||||    
T  9949639 cacatagaagccatataagttgcataaaagaacgtctagcagcaccaccacc 9949588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 71
Target Start/End: Original strand, 45421297 - 45421342
Alignment:
Q  26 ataagttgcataaaagaacgtctagcaacaccatcacctgtcaaat 71  Q
    ||||||||||||||||||||||||| ||||  | ||||||||||||    
T  45421297 ataagttgcataaaagaacgtctagaaacattaccacctgtcaaat 45421342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 118; Significance: 3e-60; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 8 - 307
Target Start/End: Complemental strand, 2813879 - 2813572
Alignment:
Q  8 caggcacatagaaatcacataagttgcataaaagaacgtctagcaacaccatcacctgtcaaatgaataaactgnnnnnnnntgatcggaaatattatct 107  Q
    ||||||||||||| ||| || ||||||||||| |||||||||||||||||| |||||||||||||| | |||||        ||||  ||||||||||||    
T  2813879 caggcacatagaagtcatattagttgcataaacgaacgtctagcaacaccaccacctgtcaaatgagtgaactg-taaaaaatgatttgaaatattatct 2813781  T
Q  108 gcgtc------------accaatccaatcttgcaccaaatgccacagagaa-caaaagtattacacaataaaaagagatgttgtgccgtttcaggatgac 194  Q
    |  ||             |||||||||||  |||||||||||||||||||| |||||||||  ||||||||||| |||||| |||||| |||||||||||    
T  2813780 gtatccaccccatatcacccaatccaatcgcgcaccaaatgccacagagaatcaaaagtatcgcacaataaaaatagatgtcgtgccgattcaggatgac 2813681  T
Q  195 cacaaccagcaattaacacacgaggacatgtcgggcgacaacacccgtcttgcaatcaaatttgtctttgttggtaaacgatcacggatgaacctccacg 294  Q
    ||||||||||    |||||||||||||||||| ||||||| ||||||||| ||||||||||||||| |||||||||||||||||||||||| ||||||||    
T  2813680 cacaaccagc----aacacacgaggacatgtcaggcgacagcacccgtctagcaatcaaatttgtccttgttggtaaacgatcacggatgagcctccacg 2813585  T
Q  295 cgaaaacggaaac 307  Q
    | |||||||||||    
T  2813584 caaaaacggaaac 2813572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 8 - 307
Target Start/End: Complemental strand, 6176857 - 6176550
Alignment:
Q  8 caggcacatagaaatcacataagttgcataaaagaacgtctagcaacaccatcacctgtcaaatgaataaactgnnnnnnnntgatcggaaatattatct 107  Q
    |||||||||| ||  || || |||||||||||||||||||||||||||||| |||||||||||||| | |||||        ||||| ||||||||||||    
T  6176857 caggcacataaaagccatattagttgcataaaagaacgtctagcaacaccaccacctgtcaaatgagtgaactgtaaaaaa-tgatctgaaatattatct 6176759  T
Q  108 gcgtc------------accaatccaatcttgcaccaaatgccacagagaac-aaaagtattacacaataaaaagagatgttgtgccgtttcaggatgac 194  Q
    |  ||            ||||||||||||| ||||||||||||||||||||| |||||||| |||||||||||| |||||  |||||| |||||||||||    
T  6176758 gtatccaccccatagcaaccaatccaatctcgcaccaaatgccacagagaactaaaagtatcacacaataaaaatagatggcgtgccgattcaggatgac 6176659  T
Q  195 cacaaccagcaattaacacacgaggacatgtcgggcgacaacacccgtcttgcaatcaaatttgtctttgttggtaaacgatcacggatgaacctccacg 294  Q
    ||||||||||||    |||||||||||||||| ||||||||||||||||| ||||||||||| ||| |||||||||||||||||||||||| |||||| |    
T  6176658 cacaaccagcaa----cacacgaggacatgtcaggcgacaacacccgtctagcaatcaaattagtccttgttggtaaacgatcacggatgagcctccatg 6176563  T
Q  295 cgaaaacggaaac 307  Q
    | ||||| |||||    
T  6176562 caaaaacagaaac 6176550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 127 - 307
Target Start/End: Original strand, 7146932 - 7147109
Alignment:
Q  127 gcaccaaatgccacagagaac-aaaagtattacacaataaaaagagatgttgtgccgtttcaggatgaccacaaccagcaattaacacacgaggacatgt 225  Q
    ||||||||||||||||||||| |||||||| |||||||||||| |||||| | |||| |||||||||||||||| ||||||    ||||||| |||||||    
T  7146932 gcaccaaatgccacagagaaccaaaagtatcacacaataaaaatagatgtcgagccgattcaggatgaccacaatcagcaa----cacacgaagacatgt 7147027  T
Q  226 cgggcgacaacacccgtcttgcaatcaaatttgtctttgttggtaaacgatcacggatgaacctccacgcgaaaacggaaac 307  Q
    | ||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||| ||||||||| |||||||||||    
T  7147028 caggcgacaacacccgtctagcaatcaaatttgtccttgttggtaaacgatcacggatgagcctccacgcaaaaacggaaac 7147109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 117 - 307
Target Start/End: Original strand, 23601654 - 23601841
Alignment:
Q  117 atccaatcttgcaccaaatgccacagagaac-aaaagtattacacaataaaaagagatgttgtgccgtttcaggatgaccacaaccagcaattaacacac 215  Q
    ||||||||| ||||||||||||||||||||| |||||||| |||||||||||| |||||| |  ||| |||||||||||||||| ||||||    |||||    
T  23601654 atccaatctcgcaccaaatgccacagagaaccaaaagtatcacacaataaaaatagatgtcgaaccgattcaggatgaccacaaacagcaa----cacac 23601749  T
Q  216 gaggacatgtcgggcgacaacacccgtcttgcaatcaaatttgtctttgttggtaaacgatcacggatgaacctccacgcgaaaacggaaac 307  Q
    || |||||||| ||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||| ||||||||| ||||| |||||    
T  23601750 gaagacatgtcaggcgacaacacccgtctagcaatcaaatttgtccttgttggtaaacgatcacggatgagcctccacgcaaaaacagaaac 23601841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 113 - 307
Target Start/End: Original strand, 29309285 - 29309476
Alignment:
Q  113 accaatccaatcttgcaccaaatgccacagagaac-aaaagtattacacaataaaaagagatgttgtgccgtttcaggatgaccacaaccagcaattaac 211  Q
    |||||||||| || |||||||||| |||||||||| |||||||| |||||||||||| |||||| |||||| |||||||||||||||||||||||    |    
T  29309285 accaatccaagctcgcaccaaatgtcacagagaaccaaaagtatcacacaataaaaatagatgtcgtgccgattcaggatgaccacaaccagcaa----c 29309380  T
Q  212 acacgaggacatgtcgggcgacaacacccgtcttgcaatcaaatttgtctttgttggtaaacgatcacggatgaacctccacgcgaaaacggaaac 307  Q
    ||||||||||||||| ||||||| ||||||||| |||||||| |||||| ||||||||||||||||||||| || || |||||  |||||||||||    
T  29309381 acacgaggacatgtcaggcgacagcacccgtctagcaatcaagtttgtccttgttggtaaacgatcacggaggagccgccacgtaaaaacggaaac 29309476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 113 - 301
Target Start/End: Original strand, 9378974 - 9379159
Alignment:
Q  113 accaatccaatcttgcaccaaatgccacagagaac-aaaagtattacacaataaaaagagatgttgtgccgtttcaggatgaccacaaccagcaattaac 211  Q
    ||||||||||||  |||||| |||||| |  |||| |||||| ||||||||||||||||| |||||||||||||||||||||||||||||| ||||        
T  9378974 accaatccaatcacgcaccatatgccaaatcgaaccaaaagtgttacacaataaaaagaggtgttgtgccgtttcaggatgaccacaaccatcaat---- 9379069  T
Q  212 acacgaggacatgtcgggcgacaacacccgtcttgcaatcaaatttgtctttgttggtaaacgatcacggatgaacctccacgcgaaaac 301  Q
    |||| |||||||||  | |||||||||| ||||  ||||||||||||| ||||||||||||||||||| ||||| ||||||||| |||||    
T  9379070 acacaaggacatgtaagacgacaacacctgtctaacaatcaaatttgtttttgttggtaaacgatcacagatgagcctccacgcaaaaac 9379159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 162 - 307
Target Start/End: Complemental strand, 14904379 - 14904238
Alignment:
Q  162 ataaaaagagatgttgtgccgtttcaggatgaccacaaccagcaattaacacacgaggacatgtcgggcgacaacacccgtcttgcaatcaaatttgtct 261  Q
    ||||||| |||||| |||||| |||||||||||||||||||||||    || ||||||||||||| ||| ||| ||||||||| |||||||||||||||     
T  14904379 ataaaaatagatgtcgtgccgattcaggatgaccacaaccagcaa----catacgaggacatgtcaggcaacagcacccgtctagcaatcaaatttgtcc 14904284  T
Q  262 ttgttggtaaacgatcacggatgaacctccacgcgaaaacggaaac 307  Q
    |||||||||||||||||||||||| |||| |||| |||| ||||||    
T  14904283 ttgttggtaaacgatcacggatgagcctcaacgcaaaaatggaaac 14904238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 12 - 307
Target Start/End: Complemental strand, 25873487 - 25873182
Alignment:
Q  12 cacatagaaatcacataagttgcataaaagaacgtctagcaacaccatcacctgtcaaatgaataaactgnnnnnnnntgatcggaaatattatctgcgt 111  Q
    |||||||||  || || ||||||||||||||||| |||||| ||||| |||||| ||||||| | |||||        ||||||||||||||||||||||    
T  25873487 cacatagaagccatatgagttgcataaaagaacgcctagcagcaccaccacctgccaaatgagtgaactgtaaaaaaatgatcggaaatattatctgcgt 25873388  T
Q  112 ca------------ccaatccaatcttgcaccaaatgccacagagaacaaaag-tattacacaataaaaaga-gatgttgtgccgtttcaggatgaccac 197  Q
    |             |||||||||||| |||||||||||||||  |||| |||| ||| |||| ||||||| | | |||||||||| ||||||||||||||    
T  25873387 ccaccccatagcatccaatccaatctcgcaccaaatgccacatcgaaccaaaggtatcacacgataaaaaaaaggtgttgtgccgattcaggatgaccac 25873288  T
Q  198 aaccagcaattaacacacgaggacatgtcgggcgacaacacccgtcttgcaatcaaatttgtctttgttggtaaacgatcacggatgaacctccacgcga 297  Q
    | |||||||    ||||||| ||||||||  |||| ||||||||||| | |||||||||| || |||| |||||||| ||||| | || ||||||||| |    
T  25873287 acccagcaa----cacacgaagacatgtcaagcgataacacccgtctagaaatcaaatttatccttgtcggtaaacggtcacgaaggagcctccacgcaa 25873192  T
Q  298 aaacggaaac 307  Q
    ||||||||||    
T  25873191 aaacggaaac 25873182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 113 - 282
Target Start/End: Complemental strand, 49732196 - 49732029
Alignment:
Q  113 accaatccaatcttgcaccaaatgccacagagaac-aaaagtattacacaataaaaagagatgttgtgccg-tttcaggatgaccacaaccagcaattaa 210  Q
    ||||||||||||  | |||| |||||| || |||| |||||| |||||||| |||||||||||||| |||| |||| |||||||| ||||||||     |    
T  49732196 accaatccaatcacgtaccacatgccaaagcgaaccaaaagtgttacacaacaaaaagagatgttgggccgttttccggatgaccgcaaccagc----ga 49732101  T
Q  211 cacacgaggacatgtcgggcgacaacacccgtcttgcaatcaaatttgtctttgttggtaaacgatcacgga 282  Q
    ||||  ||||||||||   ||| ||||||||||  ||||||||||| |||||||| ||||||||||| ||||    
T  49732100 cacataaggacatgtcattcgataacacccgtcgagcaatcaaattagtctttgtcggtaaacgatcccgga 49732029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 12 - 73
Target Start/End: Original strand, 29309173 - 29309234
Alignment:
Q  12 cacatagaaatcacataagttgcataaaagaacgtctagcaacaccatcacctgtcaaatga 73  Q
    ||||||||| ||| || |||||||||||||||||||||||| ||||| ||||||||||||||    
T  29309173 cacatagaagtcatattagttgcataaaagaacgtctagcagcaccaccacctgtcaaatga 29309234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 26 - 307
Target Start/End: Complemental strand, 30167706 - 30167417
Alignment:
Q  26 ataagttgcataaaagaacgtctagcaacaccatcacctgtcaaatgaataaactgnnnnnnnntgatcggaaatattatctgcgtc------------a 113  Q
    ||||||||||||||||||||||||| |||| || |||| ||||||| | |||||||        |||||||||||||||||||| ||            |    
T  30167706 ataagttgcataaaagaacgtctagaaacagcaccacccgtcaaataagtaaactg-aagaaaatgatcggaaatattatctgcatccacccccgcacaa 30167608  T
Q  114 ccaatccaatcttgcaccaaatgccacagagaa-caaaagtattacacaataaaaagagatgttgtgccgtttcaggatgaccacaaccagcaattaaca 212  Q
    |||||||||||  ||||||||||||| || ||| ||||||| ||||| || ||||| ||||||   |||| |||||| ||||| ||||||||     |||    
T  30167607 ccaatccaatcacgcaccaaatgccaaagcgaaccaaaagtgttacaaaacaaaaaaagatgtgtagccgattcaggctgaccgcaaccagc----gaca 30167512  T
Q  213 cacgaggacatgtcgggcgacaacacccgtcttgcaatcaaatttgtctttgttggtaaacgatcacggatgaacctccacgcgaaaacggaaac 307  Q
    ||  |||| || || | || |||||||| ||  |||||||| || ||||| |||||||| |||||||||| ||  |||||||| ||||| |||||    
T  30167511 cataaggagatatcagtcggcaacacccttcgagcaatcaagttagtcttcgttggtaatcgatcacggaggagtctccacgcaaaaactgaaac 30167417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 8 - 73
Target Start/End: Original strand, 7146802 - 7146867
Alignment:
Q  8 caggcacatagaaatcacataagttgcataaaagaacgtctagcaacaccatcacctgtcaaatga 73  Q
    |||||||| ||||  || |||||||||| |||||||||||||||| ||||| ||||| ||||||||    
T  7146802 caggcacaaagaagccatataagttgcaaaaaagaacgtctagcagcaccaccacctatcaaatga 7146867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 8 - 73
Target Start/End: Original strand, 23601534 - 23601599
Alignment:
Q  8 caggcacatagaaatcacataagttgcataaaagaacgtctagcaacaccatcacctgtcaaatga 73  Q
    |||||||| ||||  || || |||||||||||||||||||||||| ||||| ||||| ||||||||    
T  23601534 caggcacaaagaagccagattagttgcataaaagaacgtctagcagcaccaccacctatcaaatga 23601599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 155 - 206
Target Start/End: Complemental strand, 28675148 - 28675097
Alignment:
Q  155 ttacacaataaaaagagatgttgtgccgtttcaggatgaccacaaccagcaa 206  Q
    ||||||||||||||||||||||||||||||  |||| | ||||| |||||||    
T  28675148 ttacacaataaaaagagatgttgtgccgttcgaggaagtccacacccagcaa 28675097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 6 - 78
Target Start/End: Complemental strand, 28675310 - 28675238
Alignment:
Q  6 cacaggcacatagaaatcacataagttgcataaaagaacgtctagcaacaccatcacctgtcaaatgaataaa 78  Q
    ||||| |||| |||| ||| || |||||||||||||||||||||||   |||||||||| ||| |||| ||||    
T  28675310 cacagacacacagaagtcaaatgagttgcataaaagaacgtctagctttaccatcacctatcatatgagtaaa 28675238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 115; Significance: 2e-58; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 113 - 307
Target Start/End: Complemental strand, 8487244 - 8487053
Alignment:
Q  113 accaatccaatcttgcaccaaatgccacagagaac-aaaagtattacacaataaaaagagatgttgtgccgtttcaggatgaccacaaccagcaattaac 211  Q
    ||||||||||||| ||||||||| ||||||||||| |||||||| |||||||||||| |||||  |||||| |||||||||||||||||||||||    |    
T  8487244 accaatccaatctcgcaccaaataccacagagaaccaaaagtatcacacaataaaaatagatggcgtgccgattcaggatgaccacaaccagcaa----c 8487149  T
Q  212 acacgaggacatgtcgggcgacaacacccgtcttgcaatcaaatttgtctttgttggtaaacgatcacggatgaacctccacgcgaaaacggaaac 307  Q
    ||||||||||||||| ||||||||||||||||| ||||||||||||||| |||||||| ||||||||||||||| ||||||||| ||||| |||||    
T  8487148 acacgaggacatgtcaggcgacaacacccgtctagcaatcaaatttgtccttgttggttaacgatcacggatgagcctccacgcaaaaacagaaac 8487053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 113 - 307
Target Start/End: Original strand, 20674899 - 20675090
Alignment:
Q  113 accaatccaatcttgcaccaaatgccacagagaac-aaaagtattacacaataaaaagagatgttgtgccgtttcaggatgaccacaaccagcaattaac 211  Q
    ||||||||||||| ||||||||||||||||||||| |||||||| |||||||||||| |||||| |||||| |||||||||||||||||||||||    |    
T  20674899 accaatccaatctcgcaccaaatgccacagagaaccaaaagtatcacacaataaaaatagatgtcgtgccgattcaggatgaccacaaccagcaa----c 20674994  T
Q  212 acacgaggacatgtcgggcgacaacacccgtcttgcaatcaaatttgtctttgttggtaaacgatcacggatgaacctccacgcgaaaacggaaac 307  Q
    |||||| |||||||| ||||| | ||||| ||| ||||||||||||||| |||||||||||||||||||||||| ||||||||| |||||| ||||    
T  20674995 acacgaagacatgtcaggcgaaagcacccatctagcaatcaaatttgtccttgttggtaaacgatcacggatgagcctccacgcaaaaacgaaaac 20675090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 113 - 307
Target Start/End: Original strand, 2631275 - 2631466
Alignment:
Q  113 accaatccaatcttgcaccaaatgccacagagaac-aaaagtattacacaataaaaagagatgttgtgccgtttcaggatgaccacaaccagcaattaac 211  Q
    |||||||||| || ||||||||||||||||||||| |||||||| |||||||||||| |||||| ||||||  |||||||||||||| ||| |||    |    
T  2631275 accaatccaagctcgcaccaaatgccacagagaaccaaaagtatcacacaataaaaatagatgtcgtgccgactcaggatgaccacatccaccaa----c 2631370  T
Q  212 acacgaggacatgtcgggcgacaacacccgtcttgcaatcaaatttgtctttgttggtaaacgatcacggatgaacctccacgcgaaaacggaaac 307  Q
    ||||||||||||||| ||||||||||||||||| ||||||||||||||| ||||||||||||||||||||| || || |||| | |||||||||||    
T  2631371 acacgaggacatgtctggcgacaacacccgtctagcaatcaaatttgtccttgttggtaaacgatcacggaggagccgccacacaaaaacggaaac 2631466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 117 - 307
Target Start/End: Complemental strand, 23873735 - 23873548
Alignment:
Q  117 atccaatcttgcaccaaatgccacagagaac-aaaagtattacacaataaaaagagatgttgtgccgtttcaggatgaccacaaccagcaattaacacac 215  Q
    ||||||||  ||||||||||||||||||||| |||||||| |||||||||||| |||||  | |||| |||||||||||| ||||||||||    |||||    
T  23873735 atccaatcacgcaccaaatgccacagagaaccaaaagtatcacacaataaaaatagatgacgagccgattcaggatgaccgcaaccagcaa----cacac 23873640  T
Q  216 gaggacatgtcgggcgacaacacccgtcttgcaatcaaatttgtctttgttggtaaacgatcacggatgaacctccacgcgaaaacggaaac 307  Q
    || |||||||| | ||||||||||||||  ||||||||||||||| ||||||||||||||||||||| || ||||||||| |||||||||||    
T  23873639 gaagacatgtcagacgacaacacccgtcgagcaatcaaatttgtccttgttggtaaacgatcacggaggagcctccacgcaaaaacggaaac 23873548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 117 - 307
Target Start/End: Original strand, 55298501 - 55298688
Alignment:
Q  117 atccaatcttgcaccaaatgccacagagaac-aaaagtattacacaataaaaagagatgttgtgccgtttcaggatgaccacaaccagcaattaacacac 215  Q
    ||||||||  ||||||||||||||||||||| |||||||| |||||||||||| |||||| | |||| |||||||||||| || |||||||    |||||    
T  55298501 atccaatcacgcaccaaatgccacagagaaccaaaagtatcacacaataaaaatagatgtcgagccgattcaggatgaccgcagccagcaa----cacac 55298596  T
Q  216 gaggacatgtcgggcgacaacacccgtcttgcaatcaaatttgtctttgttggtaaacgatcacggatgaacctccacgcgaaaacggaaac 307  Q
    || |||||||| | ||||||||||||||  ||||||||||||||| ||||||||||||||||||||| || ||||||||| |||||||||||    
T  55298597 gaagacatgtcagacgacaacacccgtcgagcaatcaaatttgtccttgttggtaaacgatcacggaggagcctccacgcaaaaacggaaac 55298688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 113 - 282
Target Start/End: Complemental strand, 3130242 - 3130076
Alignment:
Q  113 accaatccaatcttgcaccaaatgccacagagaac-aaaagtattacacaataaaaagagatgttgtgccgtttcaggatgaccacaaccagcaattaac 211  Q
    ||||||||||||  |||||| |||||| || |||| |||||| |||||||| |||||||||||||| |||||||| |||||||| ||||||||     ||    
T  3130242 accaatccaatcacgcaccatatgccaaagcgaaccaaaagtgttacacaacaaaaagagatgttgggccgtttctggatgaccgcaaccagc----tac 3130147  T
Q  212 acacgaggacatgtcgggcgacaacacccgtcttgcaatcaaatttgtctttgttggtaaacgatcacgga 282  Q
    |||  | ||||||||   ||| ||||||||||  ||||||||||| |||||||| ||||||||||| ||||    
T  3130146 acataaagacatgtcattcgataacacccgtcgagcaatcaaattagtctttgtcggtaaacgatctcgga 3130076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 113 - 277
Target Start/End: Complemental strand, 8655336 - 8655175
Alignment:
Q  113 accaatccaatcttgcaccaaatgccacagagaac-aaaagtattacacaataaaaagagatgttgtgccgtttcaggatgaccacaaccagcaattaac 211  Q
    ||||||||||||  |||||| |||||| || |||| |||||| |||||| |||||||||||||||| ||||||||  ||||||||||||||||     ||    
T  8655336 accaatccaatcacgcaccatatgccaaagcgaaccaaaagtgttacacgataaaaagagatgttgagccgtttccagatgaccacaaccagc----gac 8655241  T
Q  212 acacgaggacatgtcgggcgacaacacccgtcttgcaatcaaatttgtctttgttggtaaacgatc 277  Q
    |||  |||||||||   |||| |||||||| |  |||||||||||  ||||||||||||| |||||    
T  8655240 acataaggacatgtgatgcgataacacccgacgagcaatcaaattaatctttgttggtaaccgatc 8655175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 113 - 301
Target Start/End: Complemental strand, 7663501 - 7663317
Alignment:
Q  113 accaatccaatcttgcaccaaatgccacagagaac-aaaagtattacacaataaaaagagatgttgtgccgtttcaggatgaccacaaccagcaattaac 211  Q
    ||||||||||||  ||||||||||||| || |||| |||||| || ||||| ||||| | |||||| |||| |||||||||||| ||||||||     ||    
T  7663501 accaatccaatcacgcaccaaatgccaaagcgaaccaaaagtgttgcacaaaaaaaaaa-atgttgagccgattcaggatgaccgcaaccagc----gac 7663407  T
Q  212 acacgaggacatgtcgggcgacaacacccgtcttgcaatcaaatttgtctttgttggtaaacgatcacggatgaacctccacgcgaaaac 301  Q
    |||  ||||||| || | || |||||||| ||  |||||||| || ||||| |||||||||||||| |||||||  |||||||| |||||    
T  7663406 acataaggacatatcagtcggcaacacccttcgagcaatcaagttagtcttcgttggtaaacgatctcggatgagtctccacgcaaaaac 7663317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 8 - 71
Target Start/End: Complemental strand, 8487360 - 8487297
Alignment:
Q  8 caggcacatagaaatcacataagttgcataaaagaacgtctagcaacaccatcacctgtcaaat 71  Q
    |||||||||| ||  || || |||||||||||||||||||||||||||||| ||||||||||||    
T  8487360 caggcacataaaagccatattagttgcataaaagaacgtctagcaacaccaccacctgtcaaat 8487297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 11 - 73
Target Start/End: Original strand, 2631162 - 2631224
Alignment:
Q  11 gcacatagaaatcacataagttgcataaaagaacgtctagcaacaccatcacctgtcaaatga 73  Q
    ||||||||||  || || |||||||||||||||||||||||| ||||| ||||||||||||||    
T  2631162 gcacatagaagccatattagttgcataaaagaacgtctagcagcaccaccacctgtcaaatga 2631224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 9 - 70
Target Start/End: Original strand, 20673471 - 20673532
Alignment:
Q  9 aggcacatagaaatcacataagttgcataaaagaacgtctagcaacaccatcacctgtcaaa 70  Q
    ||||||||||||  || || |||||||||||||||||||||||||||||| || ||||||||    
T  20673471 aggcacatagaagccatattagttgcataaaagaacgtctagcaacaccaccaactgtcaaa 20673532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 113 - 195
Target Start/End: Original strand, 23279484 - 23279567
Alignment:
Q  113 accaatccaatcttgcaccaaatgccacagagaaca-aaagtattacacaataaaaagagatgttgtgccgtttcaggatgacc 195  Q
    ||||||||||||  |||||| |||||| || ||||  ||||  ||||||||||||||||||||||||| ||||||||| |||||    
T  23279484 accaatccaatcacgcaccatatgccaaagcgaacttaaagagttacacaataaaaagagatgttgtgtcgtttcaggttgacc 23279567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 71
Target Start/End: Complemental strand, 7663599 - 7663554
Alignment:
Q  26 ataagttgcataaaagaacgtctagcaacaccatcacctgtcaaat 71  Q
    ||||||||||||||||||||||||| ||||  | ||||||||||||    
T  7663599 ataagttgcataaaagaacgtctagaaacaaaaccacctgtcaaat 7663554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 81
Target Start/End: Complemental strand, 23873855 - 23873782
Alignment:
Q  8 caggcacatagaaatcacataagttgcataaaagaacgtctagcaacaccatcacctgtcaaatgaataaactg 81  Q
    |||||||| ||||  || || |||||||||||||||||||||||| ||||  ||||| |||||||| | |||||    
T  23873855 caggcacaaagaagccagattagttgcataaaagaacgtctagcagcacctccacctatcaaatgagtgaactg 23873782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0418 (Bit Score: 49; Significance: 5e-19; HSPs: 2)
Name: scaffold0418
Description:

Target: scaffold0418; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 113 - 301
Target Start/End: Original strand, 7552 - 7737
Alignment:
Q  113 accaatccaatcttgcaccaaatgccacagagaac-aaaagtattacacaataaaaagagatgttgtgccgtttcaggatgaccacaaccagcaattaac 211  Q
    ||||||||||||  ||||||||||||| || |||| |||||| || ||||| ||||| | |||||| |||| |||||||||||| ||||||||     ||    
T  7552 accaatccaatcacgcaccaaatgccaaagcgaaccaaaagtgttgcacaaaaaaaaaaaatgttgagccgattcaggatgaccgcaaccagc----gac 7647  T
Q  212 acacgaggacatgtcgggcgacaacacccgtcttgcaatcaaatttgtctttgttggtaaacgatcacggatgaacctccacgcgaaaac 301  Q
    |||  ||||||| || | || |||||||| ||  |||||||| || ||||| |||||||||||||| |||||||  |||||||| |||||    
T  7648 acataaggacatatcagtcggcaacacccttcgagcaatcaagttagtcttcgttggtaaacgatctcggatgagtctccacgcaaaaac 7737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0418; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 71
Target Start/End: Original strand, 7454 - 7499
Alignment:
Q  26 ataagttgcataaaagaacgtctagcaacaccatcacctgtcaaat 71  Q
    ||||||||||||||||||||||||| ||||  | ||||||||||||    
T  7454 ataagttgcataaaagaacgtctagaaacaaaaccacctgtcaaat 7499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 113 - 204
Target Start/End: Complemental strand, 134899 - 134807
Alignment:
Q  113 accaatccaatcttgcaccaaatgccacagagaacaaaa-gtattacacaataaaaagagatgttgtgccgtttcaggatgaccacaaccagc 204  Q
    ||||||||||||  |||||| |||||| || |||| ||| || ||||||||||||||||||||||| |||||||| |||||||||||||||||    
T  134899 accaatccaatcacgcaccatatgccaaagcgaaccaaacgtgttacacaataaaaagagatgttgagccgtttccggatgaccacaaccagc 134807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 49; Significance: 5e-19; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 113 - 204
Target Start/End: Complemental strand, 312726 - 312634
Alignment:
Q  113 accaatccaatcttgcaccaaatgccacagagaacaaaa-gtattacacaataaaaagagatgttgtgccgtttcaggatgaccacaaccagc 204  Q
    ||||||||||||  |||||| |||||| || |||| ||| || ||||||||||||||||||||||| |||||||| |||||||||||||||||    
T  312726 accaatccaatcacgcaccatatgccaaagcgaaccaaacgtgttacacaataaaaagagatgttgagccgtttccggatgaccacaaccagc 312634  T

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Target: scaffold0002; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 113 - 204
Target Start/End: Complemental strand, 328180 - 328088
Alignment:
Q  113 accaatccaatcttgcaccaaatgccacagagaacaaaa-gtattacacaataaaaagagatgttgtgccgtttcaggatgaccacaaccagc 204  Q
    ||||||||||||  |||||| |||||| || |||| ||| || ||||||||||||||||||||||| |||||||| |||||||||||||||||    
T  328180 accaatccaatcacgcaccatatgccaaagcgaaccaaacgtgttacacaataaaaagagatgttgagccgtttccggatgaccacaaccagc 328088  T

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