View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17641_low_2 (Length: 644)

Name: NF17641_low_2
Description: NF17641
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17641_low_2
NF17641_low_2
[»] chr1 (2 HSPs)
chr1 (1-628)||(9945958-9946588)
chr1 (111-196)||(1022129-1022214)


Alignment Details
Target: chr1 (Bit Score: 545; Significance: 0; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 545; E-Value: 0
Query Start/End: Original strand, 1 - 628
Target Start/End: Original strand, 9945958 - 9946588
Alignment:
Q  1 tctccctctccataccaccctacagtcattgtcattgtcatcattgcatttggtggcattgccttgctctccatgcttgcttttgcaatattttgctgcg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  9945958 tctccctctccataccaccctacagtcattgtcattgtcatcattgcatttggtggcattgccttgctctccatgcttgcttttgcattattttgctgcg 9946057  T
Q  101 ttcaaaagaggaagaagaaacaagaaaccgatatcgttcatatcaatgaacataaaaagatcacggaaaatattgtgcctggtcctaatggacaaccact 200  Q
    |||||||||||||||||||||||||||||||| || |||||||| |||||||||||||||| |||||||| |||||||||||||||  ||||||||||      
T  9946058 ttcaaaagaggaagaagaaacaagaaaccgatgtcattcatatcgatgaacataaaaagattacggaaaacattgtgcctggtccttttggacaaccaac 9946157  T
Q  201 ggtggtggttacagttgaagatgatgttcatattgatgaagtaattaaaaagaatgcagaagttggtcatgctttacatgctgaagcatcaaaagttgaa 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9946158 ggtggtggttacagttgaagatgatgttcatattgatgaagtaattaaaaagaatgcagaagttggtcatgctttacatgctgaagcatcaaaagttgaa 9946257  T
Q  301 ccaaatcaagacaatgtttctagtagcaatgaagtggcaactactacttctcctggtcatgaac---atagtcatcatattcagccacaaattgagaaca 397  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||  |||||||||||||||||||||||||||||    
T  9946258 ccaaatcaagacaatgtttctagtagcaatgaagtggcaactactacttctcctggtcatgaacatgatcatcatcatattcagccacaaattgagaaca 9946357  T
Q  398 agccttgatgttggcaagtattgtgtgtatattcccacagagatattatacatcctcgtacatggattccaaacgaaggatcctatttcacctaaattac 497  Q
    |||||||||||||| |||| |||||||||||||||||||||||||||||| |||||||||||||||||| |||| |||||||||||||||||||||||||    
T  9946358 agccttgatgttgggaagtgttgtgtgtatattcccacagagatattatatatcctcgtacatggattcaaaacaaaggatcctatttcacctaaattac 9946457  T
Q  498 tttcattgaataaatatccttaatttgtttttatttgttcattttggtttaataaccattcatttgttaaacctgtgtatctaatttgatattaaacata 597  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9946458 tttcattgaataaatatccttaatttgtttttatttgttaattttggtttaataaccattcatttgttaaacctgtgtatctaatttgatattaaacata 9946557  T
Q  598 tctgattattgcctcaagtttttcttgttac 628  Q
    |||||||||||||||||||||||||||||||    
T  9946558 tctgattattgcctcaagtttttcttgttac 9946588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 111 - 196
Target Start/End: Complemental strand, 1022214 - 1022129
Alignment:
Q  111 gaagaagaaacaagaaaccgatatcgttcatatcaatgaacataaaaagatcacggaaaatattgtgcctggtcctaatggacaac 196  Q
    |||||||| |||||||||||||||| | || ||| |||| |||||||||  || |||||  ||||| |||||||||  ||||||||    
T  1022214 gaagaagacacaagaaaccgatatcatacacatcgatgagcataaaaagggcaaggaaaccattgtacctggtccttttggacaac 1022129  T

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