View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17641_low_3 (Length: 621)
Name: NF17641_low_3
Description: NF17641
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17641_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 349; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 198 - 604
Target Start/End: Original strand, 5050854 - 5051249
Alignment:
| Q |
198 |
ttctaatgaaatgaaacccatgacaatgtttggtttgcttgacaaaagttacatgaattgacttgaggcaaccaaacggcacatactcacaaataaaatt |
297 |
Q |
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| T |
5050854 |
ttctaatgaaatgaaacccatgacaatgtttggtttgcttgacaaaagttacatgaattgacttgaggcaaccaaacggcacatactcacaaataaaatt |
5050953 |
T |
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| Q |
298 |
gggtggtacaaaggattactagctaattgaatagttgattgactctcatggaaggccataacagcagaggagttgcttcatcgtaagaaatgcccaagca |
397 |
Q |
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| T |
5050954 |
gggtggtacaaaggattactagctaattgaatagttgattgactcccatggaaggccataacagcagaggatttgcttcatcgtaagaaatgcccaagca |
5051053 |
T |
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| Q |
398 |
tgatattctttgaagaggaacgaacaacaattggctgcttctttaatttcctagcaattatgaaaaacatcgaccattatgaaaaataagaccgaacgtt |
497 |
Q |
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| T |
5051054 |
tgatattctttgaagaggaacgaacaacaataggctgcttctttaatttcctagcaattatgaaaaacatcgaccattatgaaaaataagaccgaacctt |
5051153 |
T |
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| Q |
498 |
ttaaacatcaacatcaacaaaaagtagaataaattgttattaattattaaaaaatttgttcttataagtgaatgtctaaacactataagtttgatcatgt |
597 |
Q |
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| T |
5051154 |
ttaaacatcaacatcaacaaaaagtagaataaattgttatt-----------aattggttcttataagtgaatgtctaaacactataagtttgatcatgt |
5051242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 11 - 121
Target Start/End: Original strand, 5050632 - 5050742
Alignment:
| Q |
11 |
cagagaacatgtagacaaccccaaaccggaaaaggaagattctccttttcatcacattccccagagcatggtaatggcattctttaaatttggtccaaat |
110 |
Q |
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| T |
5050632 |
cagagaacatgtagacaaccccaaaccggaaaaggaagattctccttttcatcacattccccagagcatggtaatggcattctttaaatttggtccaaat |
5050731 |
T |
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| Q |
111 |
ttccttgccaa |
121 |
Q |
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| T |
5050732 |
ttccttgccaa |
5050742 |
T |
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