View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17641_low_6 (Length: 539)
Name: NF17641_low_6
Description: NF17641
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17641_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 228; Significance: 1e-125; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 113 - 344
Target Start/End: Complemental strand, 44311405 - 44311174
Alignment:
| Q |
113 |
atcattgttgtcaagaatctctatgattctaaatttaacatttttagaaaaattcatagcatgtgggttcaattttatgaaaaattgttgaattcgtttt |
212 |
Q |
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| T |
44311405 |
atcattgttgtcaagaatctctatgattctaaatttaacatttttagaaaaattcatagcatgtgggttcaattttatgaaaaattgttgaattcgtttt |
44311306 |
T |
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| Q |
213 |
ccattttttatctaaaactaaaactgatgagcgaataataggaacaaaattaagaaaggagagaagttgaaattgagatttacatcacaatatgttaatt |
312 |
Q |
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| T |
44311305 |
ccattttttatctaaaactaaaactgatgagcgaataatagaaacaaaattaagaaaggagagaagttgaaattgagatttacatcacaatatgttaatt |
44311206 |
T |
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| Q |
313 |
gaatgacaacttcctcaaaccagatgcatcta |
344 |
Q |
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| T |
44311205 |
gaatgacaacttcctcaaaccagatgcatcta |
44311174 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 447 - 528
Target Start/End: Complemental strand, 44311066 - 44310985
Alignment:
| Q |
447 |
aatcaatggtgacaaaagttgtttaaaagattagtgttaatggcaatgaatatgatttccctttaattcttgactgagtatt |
528 |
Q |
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| T |
44311066 |
aatcaatggtgacaaaagttgtttaaaagattagtgttaatggcaatgaatatgatttccctttaattcttgactgagtatt |
44310985 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 29 - 110
Target Start/End: Complemental strand, 44311735 - 44311654
Alignment:
| Q |
29 |
atgtgatattattcttgggaatgttagttcatttcttcttttcttacaaatgcagacacaaagaataataatactacgtgaa |
110 |
Q |
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| T |
44311735 |
atgtgatattattcttgggaatgttagttcatttcttcttttcttaaaaatgcagacacaacgaataataatactatgtgaa |
44311654 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 38 - 110
Target Start/End: Complemental strand, 18701528 - 18701454
Alignment:
| Q |
38 |
tattcttgggaatgttagttcatttc---ttcttttcttacaaatgcagacacaaagaataataatactacgtgaa |
110 |
Q |
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| T |
18701528 |
tattcttgagaatgtt-gttcatttcctgttcttttcttacaattgtagacacaacgaatagtaatactatgtgaa |
18701454 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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