View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17641_low_7 (Length: 514)
Name: NF17641_low_7
Description: NF17641
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17641_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 427; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 427; E-Value: 0
Query Start/End: Original strand, 17 - 496
Target Start/End: Complemental strand, 8636964 - 8636490
Alignment:
| Q |
17 |
cagacattattcacttattttcacttgcatctccgacattaccaacttaatgtcactttagtccatatcactaccaacaaaggaacggatttgattaaca |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
8636964 |
cagacattattcacttattttcacttgcatctccgacattaccaacttaatgtcactttagtccatatcactaccaacaaaggaacggatttgattagca |
8636865 |
T |
|
| Q |
117 |
ttttgcaatttcaaggatcactttggaatattattaatgtatgagattatgttgatacatacagttctacaatttcagggaccaaattgattatttaccc |
216 |
Q |
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||||||||||||||||||||||||||| || |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| || |
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| T |
8636864 |
ttttgcaatttcaaggatcactttggattactattaatgtatgagattatgttgataca----gttctacaatttcagggaccaaattgattatttatcc |
8636769 |
T |
|
| Q |
217 |
caaaaattaaaccaaacagacaattcatcaaacatgttcaaggtgcaaaagtaaaccaaaaaccaacctgctgagagacgtaaacagcaaaaaatgaaac |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8636768 |
-aaaaattaaaccaaacagacaattcatcaaacatgttcaagttgctaaagtaaaccaaaaaccaacctgctgagagacgtaaacagcaaaaaatgaaac |
8636670 |
T |
|
| Q |
317 |
ccaccaccaatgttttccatattgttgactcatctgagtgaaacgccaatcttctctagcaccccattgccatttttcacgtctaaagtaattatgagtg |
416 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8636669 |
ccaccaccaaagttttccatattgttgactcatctgagtgaaacgccaatcttctctagcaccccattgccatttttcacgtctaaagtaattatgagtg |
8636570 |
T |
|
| Q |
417 |
agtctaatactccaaacccaagtcaacaaaatcacaatcttagacctccacaaatcatattgagccaaagggtgtgttgc |
496 |
Q |
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| T |
8636569 |
agtctaatactccaaacccaagtcaacaaaatcacaatcttagacctccacaaatcatattgagccaaagggtgtgttgc |
8636490 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 93; Significance: 5e-45; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 306 - 490
Target Start/End: Original strand, 48617482 - 48617666
Alignment:
| Q |
306 |
aaaaatgaaacccaccaccaatgttttccatattgttgactcatctgagtgaaacgccaatcttctctagcaccccattgccatttttcacgtctaaagt |
405 |
Q |
| |
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||||| ||| ||||||||||||||||||||||||||||| |||| | |||||||||||||||||| || |||||||||||||| || || ||||| |||| |
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| T |
48617482 |
aaaaaggaagcccaccaccaatgttttccatattgttgaatcatatcagtgaaacgccaatcttcccttgcaccccattgccacttctctcgtctgaagt |
48617581 |
T |
|
| Q |
406 |
aattatgagtgagtctaatactccaaacccaagtcaacaaaatcacaatcttagacctccacaaatcatattgagccaaagggtg |
490 |
Q |
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| || || |||||||||||||||| ||||||||||||| ||||| ||| | |||||||| |||||||| |||||||||||||| |
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| T |
48617582 |
agttgtggatgagtctaatactccacacccaagtcaacaggatcactatccttgacctccagaaatcatagtgagccaaagggtg |
48617666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 183 - 221
Target Start/End: Complemental strand, 3115005 - 3114967
Alignment:
| Q |
183 |
ctacaatttcagggaccaaattgattatttaccccaaaa |
221 |
Q |
| |
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|||||||||||||||||||||||| |||||||||||||| |
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|
| T |
3115005 |
ctacaatttcagggaccaaattgagtatttaccccaaaa |
3114967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 108 - 214
Target Start/End: Original strand, 7145580 - 7145682
Alignment:
| Q |
108 |
tgattaacattttgcaatttcaaggatcactttggaatattattaatgtatgagattatgttgatacatacagttctacaatttcagggaccaaattgat |
207 |
Q |
| |
|
||||||| ||||| ||||| | |||||| ||||||||||| |||| || ||||||| ||||| ||| || ||||||||| |||||||||||||| |
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| T |
7145580 |
tgattaatattttacaattatagggatcattttggaatattgataatctaagagattaagttgacaca----gtcctacaattttagggaccaaattgag |
7145675 |
T |
|
| Q |
208 |
tatttac |
214 |
Q |
| |
|
||||||| |
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|
| T |
7145676 |
tatttac |
7145682 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 110 - 205
Target Start/End: Complemental strand, 7424293 - 7424202
Alignment:
| Q |
110 |
attaacattttgcaatttcaaggatcactttggaatattattaatgtatgagattatgttgatacatacagttctacaatttcagggaccaaattg |
205 |
Q |
| |
|
|||||||||||||||||||| |||||| |||| |||||| ||||||| |||| || |||| ||||||| ||||||||| ||||| ||||||| |
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| T |
7424293 |
attaacattttgcaatttcagggatcattttgaaatattgttaatgtcagagactaggttg----atacagtcctacaattttagggatcaaattg |
7424202 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 88 - 147
Target Start/End: Complemental strand, 9078337 - 9078278
Alignment:
| Q |
88 |
taccaacaaaggaacggatttgattaacattttgcaatttcaaggatcactttggaatat |
147 |
Q |
| |
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|||||| | ||| ||| |||||||||| ||||||||||||| ||||||| |||||||||| |
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| T |
9078337 |
taccaatagagggacgaatttgattaaaattttgcaatttcgaggatcattttggaatat |
9078278 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 108 - 148
Target Start/End: Complemental strand, 21496460 - 21496420
Alignment:
| Q |
108 |
tgattaacattttgcaatttcaaggatcactttggaatatt |
148 |
Q |
| |
|
|||||||||||||||||||||| |||||| |||| |||||| |
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| T |
21496460 |
tgattaacattttgcaatttcagggatcattttgaaatatt |
21496420 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 105 - 145
Target Start/End: Complemental strand, 44139328 - 44139288
Alignment:
| Q |
105 |
atttgattaacattttgcaatttcaaggatcactttggaat |
145 |
Q |
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|
||||||||||||||||||||||||||| |||| | |||||| |
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| T |
44139328 |
atttgattaacattttgcaatttcaagtatcattgtggaat |
44139288 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 105 - 157
Target Start/End: Complemental strand, 54069319 - 54069267
Alignment:
| Q |
105 |
atttgattaacattttgcaatttcaaggatcactttggaatattattaatgta |
157 |
Q |
| |
|
|||||||||| |||||||||||||||||| | ||||||||||| ||||||| |
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|
| T |
54069319 |
atttgattaatattttgcaatttcaaggaaaattttggaatattcataatgta |
54069267 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 19 - 131
Target Start/End: Original strand, 21873581 - 21873693
Alignment:
| Q |
19 |
gacattattcacttattttcacttgcatctccgacattaccaacttaatgtcactttagtccatatcactaccaacaaaggaacggatttgattaacatt |
118 |
Q |
| |
|
||||||||||||||| |||| | |||| | || |||||||| ||||||||| | |||||| || | |||||| | ||||||| ||||||||| ||| |
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|
| T |
21873581 |
gacattattcacttagtttccaattcatccctgatattaccaatttaatgtcattctagtccctacaaataccaatagaggaacgagtttgattaaaatt |
21873680 |
T |
|
| Q |
119 |
ttgcaatttcaag |
131 |
Q |
| |
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||||||||||||| |
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| T |
21873681 |
ttgcaatttcaag |
21873693 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 21 - 71
Target Start/End: Complemental strand, 32702746 - 32702696
Alignment:
| Q |
21 |
cattattcacttattttcacttgcatctccgacattaccaacttaatgtca |
71 |
Q |
| |
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|||||||| |||| ||||| |||||||||||||||||||||||| ||||| |
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|
| T |
32702746 |
cattattctcttagtttcaaatgcatctccgacattaccaacttattgtca |
32702696 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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