View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17641_low_9 (Length: 336)
Name: NF17641_low_9
Description: NF17641
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17641_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 66; Significance: 4e-29; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 253 - 318
Target Start/End: Complemental strand, 23033923 - 23033858
Alignment:
| Q |
253 |
tttgtcattaagagttaattagatatataaggaaattacccaatgcctcgggttccacctgttact |
318 |
Q |
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| T |
23033923 |
tttgtcattaagagttaattagatatataaggaaattacccaatgcctcgggttccacctgttact |
23033858 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 114 - 160
Target Start/End: Complemental strand, 23034076 - 23034030
Alignment:
| Q |
114 |
gatcgtacaaatatcatttgtcatatagaaaccacaattatttacat |
160 |
Q |
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| T |
23034076 |
gatcgtacaaatatcatttgtcatatagaaaccacaattatttacat |
23034030 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 279 - 314
Target Start/End: Complemental strand, 23025859 - 23025824
Alignment:
| Q |
279 |
ataaggaaattacccaatgcctcgggttccacctgt |
314 |
Q |
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||||| |||||||||||||||||||||||||||||| |
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| T |
23025859 |
ataagaaaattacccaatgcctcgggttccacctgt |
23025824 |
T |
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