View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17642_high_2 (Length: 357)
Name: NF17642_high_2
Description: NF17642
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17642_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 48 - 336
Target Start/End: Complemental strand, 49269715 - 49269426
Alignment:
| Q |
48 |
ttctatgttgttggagtcatttnnnnnnntaagtatatttttacaacttacactagttagtattctaccatattgctatccttattcaatcatatagtta |
147 |
Q |
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| T |
49269715 |
ttctatgttgttggagtcatttaaaaagataagtatatttttacaacttacactagttagtattctaccatattgctatccttattcaatcatatagtta |
49269616 |
T |
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| Q |
148 |
ttatgtaacttagtaatgttgtggttgagacaaccaaactagagaggaatcatagcccttgatgcaatttggaaagagaataatattggtaacaacacaa |
247 |
Q |
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| T |
49269615 |
ttatgtaacttggtaatgttgtggttgagacaaccaaactagagaggaatcatagcccttgatgcaatttggaaagagaataatattggtaacaacacaa |
49269516 |
T |
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| Q |
248 |
tt-caaacgatatacattatttagtatcgttacttattattattattgattttctttttctttcactcaacattttgtgcatcgacgact |
336 |
Q |
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| T |
49269515 |
ttccaaacgatatacattatttagtatcgttacttattattattattgattttctttttctttcactcaacattttgtgcatcgacgact |
49269426 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 82; Significance: 1e-38; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 157 - 250
Target Start/End: Complemental strand, 2097772 - 2097679
Alignment:
| Q |
157 |
ttagtaatgttgtggttgagacaaccaaactagagaggaatcatagcccttgatgcaatttggaaagagaataatattggtaacaacacaattc |
250 |
Q |
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|||||||||||||||||||||||| ||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
2097772 |
ttagtaatgttgtggttgagacaatcaaactagataggaatcatagcccttaatgcaatttggaaagagaataatattggtaacaacacaattc |
2097679 |
T |
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