View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17642_high_3 (Length: 318)
Name: NF17642_high_3
Description: NF17642
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17642_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 1 - 281
Target Start/End: Original strand, 7124197 - 7124477
Alignment:
| Q |
1 |
ccaaagtccaaaaagaattccattgaatcctactgtcatcttccacactgcagctggtattaaatcaatctattgatgaatattagcttaatatcaatct |
100 |
Q |
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| T |
7124197 |
ccaaattccaaaaagaattccattgaatcctactgtcatcttccacactgcagctggtattaaatcaatctattgatgaacattagcttaatatcaatct |
7124296 |
T |
|
| Q |
101 |
attgctaatggtcaatcccttaacacatggagaattgtctctactggaaatattacaaaacggatatcccatccatccacatgctatgcttcaattagtt |
200 |
Q |
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| T |
7124297 |
attgctaatggtcaatcccttaacacatggagaattgtctctactggaaatattacaaaacggatatcccatccatccacatgctatgcttcaattagtt |
7124396 |
T |
|
| Q |
201 |
ggttaataatctaccatggtacaccaaccaaataaagcacctgattctttcatgcacttcaaaggcaccaaatcttcctcc |
281 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||| |||||||| ||||||| |
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| T |
7124397 |
ggttaataatctaccatggtacaccaaccaaataaagcacctaattctttcatgcacttaaaagccaccaaattttcctcc |
7124477 |
T |
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