View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17642_high_7 (Length: 210)
Name: NF17642_high_7
Description: NF17642
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17642_high_7 |
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Alignment Details
Target: chr8 (Bit Score: 186; Significance: 1e-101; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 202
Target Start/End: Complemental strand, 7293676 - 7293475
Alignment:
| Q |
1 |
tgtggacaaaacactttgtctgtggtgtcagaaatcatcatggttgtggagaagctttgccaacaattgaaatatgcatctcccgaatacaagatatttt |
100 |
Q |
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| T |
7293676 |
tgtggacaaaacactttgtctgtggtgtcagaaatcatcatggttgtggagaagctttgccaacaattgaaatatgcatctcccgaatacaagatctttt |
7293577 |
T |
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| Q |
101 |
ttaacgatctttcaaggaatgacttcaacaacatttttaagtcacttgatagctttaaacatcaactacttgatgaaatcaaaactgaaatgagcctttg |
200 |
Q |
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| T |
7293576 |
ttaacgatctttcagggaatgacttcaacaacatttttaagtcacttgatagctttaaacataaactacttgatgaaatcaaaactgaaatgagcccttg |
7293477 |
T |
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| Q |
201 |
ct |
202 |
Q |
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|| |
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| T |
7293476 |
ct |
7293475 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 3 - 194
Target Start/End: Complemental strand, 7298148 - 7297957
Alignment:
| Q |
3 |
tggacaaaacactttgtctgtggtgtcagaaatcatcatggttgtggagaagctttgccaacaattgaaatatgcatctcccgaatacaagatatttttt |
102 |
Q |
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||||| ||||||||||| |||||| ||||| || ||||||||||||||||||||||||||||||||||| || |||||||||| ||||||||||||||| |
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| T |
7298148 |
tggaccaaacactttgtttgtggtatcagatattatcatggttgtggagaagctttgccaacaattgaaccattcatctcccgagtacaagatatttttt |
7298049 |
T |
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| Q |
103 |
aacgatctttcaaggaatgacttcaacaacatttttaagtcacttgatagctttaaacatcaactacttgatgaaatcaaaactgaaatgag |
194 |
Q |
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| T |
7298048 |
aatgatgtttctggaaatgacttcaacaacatatttaagtcacttgacaactttaaagagaaactgcaagatgaaatcaaaactaaaatgag |
7297957 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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