View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17642_low_1 (Length: 454)
Name: NF17642_low_1
Description: NF17642
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17642_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 150; Significance: 4e-79; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 106 - 271
Target Start/End: Original strand, 21285701 - 21285866
Alignment:
| Q |
106 |
ttgacaaagctaaggagttgcaaattgataggctttggctggaatcagactccattgctgttgtgaatgcctttaacaaagcagctgaagttccttggca |
205 |
Q |
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| T |
21285701 |
ttgacaaagataaggagttgcaaattgataggctttggctggaatcagactccattgctgttgtgaatgcctttaacaaagcagctggagttccttggca |
21285800 |
T |
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| Q |
206 |
gatgaatactagatggcttaattgtttgatgtactgtaaaaatattagttgcatttgtactcatgt |
271 |
Q |
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| T |
21285801 |
gatgagtaccagatggcttaattgtttgatgtactgtaaaaatattagttgcatttgtactcatgt |
21285866 |
T |
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Target: chr3 (Bit Score: 88; Significance: 4e-42; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 171 - 350
Target Start/End: Complemental strand, 289114 - 288935
Alignment:
| Q |
171 |
aatgcctttaacaaagcagctgaagttccttggcagatgaatactagatggcttaattgtttgatgtactgtaaaaatattagttgcatttgtactcatg |
270 |
Q |
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||||||||||||||| ||||| ||||||||||||||||||||| |||||| |||| ||||||| |||||||||||| |||| |||||||||||| |||| |
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| T |
289114 |
aatgcctttaacaaaacagctagagttccttggcagatgaataccagatggtttaactgtttgaggtactgtaaaaacattacttgcatttgtacacatg |
289015 |
T |
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| Q |
271 |
tcctcggagagggtaacctagttgctgacgctttggcaaagaatggccgagggctggctttgtactcttcacagcggtgg |
350 |
Q |
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| T |
289014 |
tcctcagagagggtaatttggtagctgatgcatttgccaagaatggccaagggttggctttgtattcttcacagtggtgg |
288935 |
T |
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