View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17642_low_2 (Length: 391)
Name: NF17642_low_2
Description: NF17642
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17642_low_2 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 16 - 391
Target Start/End: Complemental strand, 38125179 - 38124815
Alignment:
| Q |
16 |
tttggtagatattaatcaaaattaggtttacttcttacttggaaatataatataaaagcttttttcatttcaagcttttctcttgcaaactgtatcttct |
115 |
Q |
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| T |
38125179 |
tttggtagatattaatcaaaattaggtttacttcttacttggtaatataatataaaagcttttttcatttcaagcttttctcttgcaaactgtatcttct |
38125080 |
T |
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| Q |
116 |
ttttcataacagtatttctggacttggtgagaccatcccagacacatatcaaattgctctaaaaacattcataaaccaagataatgttaattcaatttct |
215 |
Q |
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| T |
38125079 |
ttttcataacagtatttctggacttggtgagaccatcccagacacatatcaaattgctctaaaaacattcataaaccaagataatgttaattcaatttct |
38124980 |
T |
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| Q |
216 |
cattagctataaagatcacataaagaaaggagacataatgcatttagaattagcttatttaccacttatcttgtcttatagcataaactttgttttaaca |
315 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38124979 |
cattagctata-----------aagaaaggagacataatgcatttagaattagcttatttaccacttatcttgtcttatagcataaactttgttttaaca |
38124891 |
T |
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| Q |
316 |
aggttataaaaatagttaatgccatgacatcttagtaacctagtttccgtttatttcaacaagtgttccggacaac |
391 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
38124890 |
aggttataaaaatagttaatgacatgacatcttagtaacctagtttcagtttatttcaacaagtgttccggacaac |
38124815 |
T |
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