View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17643_low_1 (Length: 501)
Name: NF17643_low_1
Description: NF17643
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17643_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 355; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 1 - 496
Target Start/End: Complemental strand, 47210602 - 47210102
Alignment:
| Q |
1 |
atgctaagacaacccataggagttggcaggcatctatcctttggtactagacaataaaaaagatcacgtcaatgaaaaatataaaaggt-tatgcataac |
99 |
Q |
| |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
47210602 |
atgcaaagacaacccataggagttggcaggcatctatcctttggtactagacaataaaaaagatcacgtcaatgaaaaatataaaaggtatatgcataac |
47210503 |
T |
|
| Q |
100 |
gtcatttatttagaggtgatgcatatctacactacatgaagataaaactaacaannnnnnnnnn-----gacggaaaaaattaatattattccgtcaaaa |
194 |
Q |
| |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||| ||||| |||||||||||| |
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|
| T |
47210502 |
gtcatttatttagaggtgatgcatatctacactgcatgaagataaaactaacattttttttttttttttgacggaaaaaataaatat-attccgtcaaaa |
47210404 |
T |
|
| Q |
195 |
acaaattaacattaaaatttatggttcctatttctaccacatgaaataatataaggcacagagttcttataaattttatggattccgttaaattagtcta |
294 |
Q |
| |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||| |
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| T |
47210403 |
acaaattaacattaaaatttatggttcctatttttaccacatgaaataatataaggcacaaagttcttataaattttatggtttccgttaaattagtcta |
47210304 |
T |
|
| Q |
295 |
nnnnnnnaaaagtttactaaattagtttaaccgagttaggtcttaaatatatgttaagttatttgtttcttcggaccatctaacatatttccatccctat |
394 |
Q |
| |
|
||||||||||||| |||||||||||| |||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47210303 |
tttttttgaaagtttactaaactagtttaaccgatttagatcttaaatacatgttaagttatttgtttcttcggaccatctaacatatttccatccctat |
47210204 |
T |
|
| Q |
395 |
ttttaattttagaaaattgtattgcatttaaggagagaggctcgagtgaagatgttattgtaaaaatattgtatcttcaagtacttgacaaaaacaaaaa |
494 |
Q |
| |
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||| |||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
47210203 |
tttcaattttagaaaattgtattgcatttaagtagagaggcttgagtgaagatgttattgtaaaaatattgtatcttcaagtacttgacaaaaacaaaaa |
47210104 |
T |
|
| Q |
495 |
ct |
496 |
Q |
| |
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|| |
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|
| T |
47210103 |
ct |
47210102 |
T |
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