View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17643_low_3 (Length: 429)
Name: NF17643_low_3
Description: NF17643
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17643_low_3 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 365; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 18 - 429
Target Start/End: Original strand, 5621346 - 5621755
Alignment:
| Q |
18 |
gttgtttatataaatctggtgttttaagctggttcagttttcatacataaatttatatcttttaacagggatgagggagtccgctggggaatacagaatg |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
5621346 |
gttgtttatataaatctggtgttttaagctggttcagtt--catacataaatttatatcttttaacagggatgagggagtccactggggaatacagaatg |
5621443 |
T |
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| Q |
118 |
gcctttatctttctagaagcacagtggtatattttaagcacaataacatggattctttaagagaaactttagagaacattacttccaaatataagaggac |
217 |
Q |
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| T |
5621444 |
gcctttatctttctagaagcacagtggtatattttaagcacaataacatggattctttaagagaaactttagagaacattacttccatatataagaggac |
5621543 |
T |
|
| Q |
218 |
caagaatttgaggcgttatattgtcattgaagctctctaccaggtagatctcgtcgttcatgcatgctgttttatttactttacacatctgtaccgtgct |
317 |
Q |
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| T |
5621544 |
caagaatttgaggcgttatattgtcattgaagctctctaccaggtagatctcatcgttcatgcatgctgttatatttactttacacatctgtactgtgct |
5621643 |
T |
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| Q |
318 |
tccaatggagcgcgtacaacatttaggtttaaaatcaaagagctataccaattgcttgcttcttgcaacttgtggtatcggtaaattgtactatatgaac |
417 |
Q |
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| T |
5621644 |
tctgatggagcgtgtacaacatttaggtataaaatcaaagagctataccaattgcttgcttcttgcaacttgtggtatcggtaaattgtactatatgaac |
5621743 |
T |
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| Q |
418 |
tactatttctgc |
429 |
Q |
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| T |
5621744 |
tactatttctgc |
5621755 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 123; Significance: 5e-63; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 56 - 266
Target Start/End: Complemental strand, 30635428 - 30635218
Alignment:
| Q |
56 |
tttcatacataaatttatatcttttaacagggatgagggagtccgctggggaatacagaatggcctttatctttctagaagcacagtggtatattttaag |
155 |
Q |
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| T |
30635428 |
tttcatatataattttgtattttttaacagggatgaaggagtccactggggaatacagaatggcctttatctttctagaagcactgtcgtgtattttaag |
30635329 |
T |
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| Q |
156 |
cacaataacatggattctttaagagaaactttagagaacattacttccaaatataagaggaccaagaatttgaggcgttatattgtcattgaagctctct |
255 |
Q |
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|||||| |||||||||||||| ||||||||||||||| ||||||| || |||||| |||||||||||||||||||||||||| | |||||||||| |
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| T |
30635328 |
cacaatgacatggattctttagaagaaactttagagaagcttacttctaagtataagcacaccaagaatttgaggcgttatattgttgtcgaagctctct |
30635229 |
T |
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| Q |
256 |
accaggtagat |
266 |
Q |
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| T |
30635228 |
accaggtagat |
30635218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 119; Significance: 1e-60; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 56 - 266
Target Start/End: Complemental strand, 21424229 - 21424019
Alignment:
| Q |
56 |
tttcatacataaatttatatcttttaacagggatgagggagtccgctggggaatacagaatggcctttatctttctagaagcacagtggtatattttaag |
155 |
Q |
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||||||| |||| ||| ||| ||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||| || || ||||||||| |
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| T |
21424229 |
tttcatatataattttgtattttttaacagggatgaaggagtccactggggaatacagaatggcctttatctttctagaagcactgtcgtgtattttaag |
21424130 |
T |
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| Q |
156 |
cacaataacatggattctttaagagaaactttagagaacattacttccaaatataagaggaccaagaatttgaggcgttatattgtcattgaagctctct |
255 |
Q |
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|||||| |||||||||||||| |||||| |||||||| ||| ||| ||||||||| |||||||||||||||||||||||||| | |||||||||| |
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| T |
21424129 |
cacaatgacatggattctttagaagaaacattagagaagcttagttctaaatataagcacaccaagaatttgaggcgttatattgttgtcgaagctctct |
21424030 |
T |
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| Q |
256 |
accaggtagat |
266 |
Q |
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| T |
21424029 |
accaggtagat |
21424019 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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