View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17644_high_6 (Length: 346)
Name: NF17644_high_6
Description: NF17644
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17644_high_6 |
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Alignment Details
Target: chr2 (Bit Score: 316; Significance: 1e-178; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 3 - 330
Target Start/End: Original strand, 45247721 - 45248048
Alignment:
| Q |
3 |
atcattgacacatcattccaagcaaatgtttgatcaccaaaatatgctatcaggtaacagtttcccttacggtgcctcttcgccttcactgatgcaactg |
102 |
Q |
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| T |
45247721 |
atcattgacacatcattccaagcaaatgtttgatcaccaaaatatgctatcaggtaacagtttcccttacagtgcctcttcgccttcactgatgcaactg |
45247820 |
T |
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| Q |
103 |
agggaacatatatctgaccaggccaccaagaatgtcccctaacctttccccagactaaatcagatacactgtaattaacatcggaaaacattgattccct |
202 |
Q |
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| T |
45247821 |
agggaacatatatctgaccaggccaccaagaatgtcccctaacctttccccagactaaatcagatacacggtaattaacatctgaaaacattgattccct |
45247920 |
T |
|
| Q |
203 |
aggcaccctatcctcttgtgtgtttttgtttgaattaagatcaaaacctcgacaatcatattgaatattattcggaatacctgctccagaaatactgatg |
302 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45247921 |
aggcaccctatcctcttgtgtgtttttgtttgaattaagatcaaaacctcgacaatcatattgaatattattcggaatacctgctccagaaatactgatg |
45248020 |
T |
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| Q |
303 |
tttgtggtttggtcttgaatcacattta |
330 |
Q |
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| T |
45248021 |
tttgtggtttggtcttgaatcacattta |
45248048 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 3 - 330
Target Start/End: Complemental strand, 44864850 - 44864511
Alignment:
| Q |
3 |
atcattgacacatcattccaagcaaatgtttgatcaccaaaatatgctatcaggtaacagtttcccttacggtgcctcttcgccttcactgatgcaactg |
102 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| |||| || | |||||| |||||||||| | |
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| T |
44864850 |
atcactgacacatcattccaagcaaatgtttgatcaccaaaatatgctatcaggtaacaattttccttaaagtgcatccttgccttctctgatgcaacgg |
44864751 |
T |
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| Q |
103 |
agggaacatatatctgaccaggccaccaagaatgtcccctaacctttccccagactaaatcagatacactgtaattaacatcggaaaacattgattccct |
202 |
Q |
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| T |
44864750 |
agggatcatagatctgaccaggccaccaaggatggccccgaacctttccccaaactaaatcagatacacgataattaacatcggaaaacacagatttcgt |
44864651 |
T |
|
| Q |
203 |
aggcaccctatcctcttgtgtgtttttgtttgaattaa------------gatcaaaacctcgacaatcatattgaatattattcggaatacctgctcca |
290 |
Q |
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||||| | |||||| |||| ||||||||| ||||||| |||||| ||| || ||||| |||||| |||||| ||| |||||||||||| |
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| T |
44864650 |
gggcacaccatcctcctgtgggtttttgttagaattaagatctacaacaagatcaataccacggcaatcgtattgactattatgcgggatacctgctcca |
44864551 |
T |
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| Q |
291 |
gaaatactgatgtttgtggtttggtcttgaatcacattta |
330 |
Q |
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| T |
44864550 |
gaaatattgatgtatgtggttttgtcttgaatcacattta |
44864511 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 109; Significance: 9e-55; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 15 - 330
Target Start/End: Original strand, 28753963 - 28754287
Alignment:
| Q |
15 |
tcattccaagcaaatgtttgatcaccaaaatatgctatcaggtaacagtttcccttacggtgcctcttcgccttcactgatgcaactgagggaacatata |
114 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||| ||| |||| || ||| | |||||||| ||||| |||| | |
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| T |
28753963 |
tcattccaagcaaatgtttgatccccaaaatatgctatcaggtaacagttttccttacgctgcttctttgctttctccgatgcaaccaagggatcataga |
28754062 |
T |
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| Q |
115 |
tctgaccaggccaccaagaatgtcccctaacctttccccagactaaatcagatacactgtaattaacatcggaaaacattgattccctaggcaccctatc |
214 |
Q |
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|||||||||||||||||| ||| | ||||||||||||||| |||||||||||||||| ||||||| | || || || ||||||||||||||| ||||| |
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| T |
28754063 |
tctgaccaggccaccaaggatggctcctaacctttccccatactaaatcagatacacggtaattagcttcagatgactctgattccctaggcacgctatc |
28754162 |
T |
|
| Q |
215 |
ctcttgtgtgtttttgtttgaatt---------aagatcaaaacctcgacaatcatattgaatattattcggaatacctgctccagaaatactgatgttt |
305 |
Q |
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||| || | ||||||| ||||| |||||||||||| | |||||||||||||||||| | | ||| |||||||||| ||| ||||| | |
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| T |
28754163 |
ctcctgagcgtttttgcaagaattaagaccaacaagatcaaaaccgcaacaatcatattgaatattctcagatatagctgctccagacatattgatgcat |
28754262 |
T |
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| Q |
306 |
gtggtttggtcttgaatcacattta |
330 |
Q |
| |
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|||||||| | ||||||||||||| |
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| T |
28754263 |
gtggtttgattctgaatcacattta |
28754287 |
T |
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