View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17644_high_7 (Length: 303)
Name: NF17644_high_7
Description: NF17644
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17644_high_7 |
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Alignment Details
Target: chr2 (Bit Score: 280; Significance: 1e-157; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 1 - 288
Target Start/End: Original strand, 9166637 - 9166924
Alignment:
| Q |
1 |
ataaagagcaaagttatttccacgaacacaatccttaacaagcataccaggatccaacaggaatggcaataaactccttctttcccttcataagcaggta |
100 |
Q |
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| T |
9166637 |
ataaagagcaaagttatttccacgaacacaatccttaacaagcataccaggatccaacaggaatggcaataaactacttctttcccttcataagcaggta |
9166736 |
T |
|
| Q |
101 |
atatgtagctgattgtgaaccttctagatgaccctgaaattgggactgacctgtttcatcttccaagagccaaggcctgttcttgtacttctcctatgta |
200 |
Q |
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| T |
9166737 |
atatgtagctgattgtgaaccttctagatgaccctgaaattgggactgacctgtttcatcttccaagaaccaaggcctgttcttgtacttctcctatgta |
9166836 |
T |
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| Q |
201 |
atgcaacaacaaatcacacatgaacaaaaaagaaaagaatcgacctattacaacccacatgcaaatattcactttgttcatgacaaat |
288 |
Q |
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| T |
9166837 |
atgcaacaacaaatcacacatgaacaaaaaagaaaagaatcgacctattacaacccacatgcaaatattcactttgttcatgacaaat |
9166924 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 19 - 287
Target Start/End: Original strand, 9155235 - 9155506
Alignment:
| Q |
19 |
tccacgaacacaatccttaacaagcataccaggatccaacaggaatggcaataaactccttctttcccttcataagcaggtaatatgtagctgattgtga |
118 |
Q |
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| T |
9155235 |
tccactaacacaatccttaacaagcataccaggaaccagcaggaatggcaacaaactccttcttttccttcattagcaggtaatacgtagctgattgtga |
9155334 |
T |
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| Q |
119 |
accttctagatgaccctgaaattgggactgacctgtttcatcttccaagagccaaggcctgttcttgtacttctcctatgtaatgcaacaacaaatcaca |
218 |
Q |
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| T |
9155335 |
accttcaagatgaccctgaaactgggactgacctgtttcatcctccaagagccaaggcctgttcttgtacttctcctatgcaatgcaacaccaaatcaca |
9155434 |
T |
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| Q |
219 |
catgaacaaaaaagaaa---agaatcgacctattacaacccacatgcaaatattcactttgttcatgacaaa |
287 |
Q |
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||||||||||||||||| | ||| |||||||||||||||| | |||| ||||||||| ||||||||||| |
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| T |
9155435 |
catgaacaaaaaagaaaaacaaaattgacctattacaacccagaggcaataattcactttcttcatgacaaa |
9155506 |
T |
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