View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17644_low_1 (Length: 875)
Name: NF17644_low_1
Description: NF17644
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17644_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 728; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 728; E-Value: 0
Query Start/End: Original strand, 19 - 866
Target Start/End: Complemental strand, 40975517 - 40974664
Alignment:
| Q |
19 |
ccgctccagttaatattggaccttacgaggtctgtatctgagccatctagagttaagattgatttcctcaaacagacatgtttggtggtgggcctgatcc |
118 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40975517 |
ccgctccagttaatattggaccttacaaggtctgtatctgagccatctagagttaagattgatttcctcaaacagacatgtttggtggtgggcctgatcc |
40975418 |
T |
|
| Q |
119 |
gggtttattagcacatacccaagattcaagtgatcctgatgcaatcttgtgggatctctgaccgatcgatccttcaagaaaacaaacataatagcatgta |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
40975417 |
gggtttattagcacatacccaagattcaagtgatcctgatgcaatcttgtgggatctctgaccgatcgatccttcaagaaaacaaacttaatagcatgta |
40975318 |
T |
|
| Q |
219 |
ggtgttgatcctccctatttccagtccaataatatttggccctgattccatgaaagtgttgaaatacaaaagcctgcaaagtcaacgacatataattatt |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
40975317 |
ggtgttgatcctccctatttccagtccaataatatttggccctgattccatgaaagtgttgaaatacaaaagcctgcaaagtcaacgacatataagtatt |
40975218 |
T |
|
| Q |
319 |
agtacaaaaaacatgaatagacatgtnnnnnnntaggcaattcattattatttaaacatataacaaggtcaagtagtcagccaactataaaatcttataa |
418 |
Q |
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||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40975217 |
agtacaaaaaacaagaatagacatgtaaaaaaataggcaattcattattatttaaacatataacaaggtcaagtagtcagccaactataaaatcttataa |
40975118 |
T |
|
| Q |
419 |
tgggctccaccgttaagcttcttatacaggtaagcaaggg-------cagtcgatccccacacgtaatcggaaataaaaattaatatcatgttacattta |
511 |
Q |
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|||||||||| ||||||||||||||||||||||||||||| |||||| ||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
40975117 |
tgggctccactgttaagcttcttatacaggtaagcaagggcagtcgtcagtcggtccccacacgtaatcagaaataaaaattaatatcatgttacattta |
40975018 |
T |
|
| Q |
512 |
agttcaatttacataaataaaaataaccataaactccagtttacattnnnnnnnncatagtacaaaaaagtttaagttgtagaaatttactactccttca |
611 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40975017 |
agttcaatttacataaataaaaataaccataaactccagtttaca-taaaaaaaacatagtacaaaaaagtttaagttgtagaaatttactactccttca |
40974919 |
T |
|
| Q |
612 |
gacatgcaataggccacatgaagttggtacttggtgagtaaatatacacttcatgtgggccaccgggatagtcattcaatggttgaggctccaccttcac |
711 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
40974918 |
gacatgcaataggccacatgaagttggtacttggtgagtaaatatacacttcatgtgggccaccggaatagtcattcaatggttgaggctccaccttcac |
40974819 |
T |
|
| Q |
712 |
ttccacctgtgattgctcatcatcatctgcattctccacctcttcctcctcctcctccatatggtgcttctcgggctggggctcaggctcgttcacctga |
811 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
40974818 |
ttccacctgtgattgctcatcatcatctgcattctccacctctgcctcctcctcctccatatggtacttctcgggctggggctcaggctcgttcacctga |
40974719 |
T |
|
| Q |
812 |
gatggttcagcaccatcaacacggcatcccccttcctctccctctccccctatgc |
866 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
40974718 |
gatggttcatcaccatcaacacggcatcccccttcctctccctctcctcctatgc |
40974664 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 355 - 461
Target Start/End: Original strand, 24141956 - 24142062
Alignment:
| Q |
355 |
gcaattcattattatttaaacatataacaaggtcaagtagtcagccaactataaaatcttataatgggctccaccgttaagcttcttatacaggtaagca |
454 |
Q |
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|||||||||||||||||| |||| |||||| |||||||| ||||||| || | || ||||||||||||||||| |||||||| | | ||||||| |||| |
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| T |
24141956 |
gcaattcattattatttatacatgtaacaatgtcaagtattcagccagctgtgaagtcttataatgggctccattgttaagctccatgtacaggtgagca |
24142055 |
T |
|
| Q |
455 |
agggcag |
461 |
Q |
| |
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||||||| |
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| T |
24142056 |
agggcag |
24142062 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 756 - 809
Target Start/End: Original strand, 24142906 - 24142959
Alignment:
| Q |
756 |
cctcctcctcctccatatggtgcttctcgggctggggctcaggctcgttcacct |
809 |
Q |
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|||||||||||||||||||||||||||||||||| | ||||||||||| ||||| |
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| T |
24142906 |
cctcctcctcctccatatggtgcttctcgggctgcgtctcaggctcgtgcacct |
24142959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 56; Significance: 1e-22; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 514 - 649
Target Start/End: Complemental strand, 9030673 - 9030540
Alignment:
| Q |
514 |
ttcaatttacataaataaaaataaccataaactccagtttacattnnnnnnnncatagtacaaaaaagtttaagttgtagaaatttactactccttcaga |
613 |
Q |
| |
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|||| ||||||||||||||||||| ||||| || |||||||||| ||||| ||||||||||| |||||||| || ||||||||||| ||||| |
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| T |
9030673 |
ttcagtttacataaataaaaataaacataaccttcagtttacat--aaaaaaacatagcacaaaaaagttaaagttgtaaaattttactactccatcaga |
9030576 |
T |
|
| Q |
614 |
catgcaataggccacatgaagttggtacttggtgag |
649 |
Q |
| |
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||||||||||||||||||||| ||||| | |||||| |
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| T |
9030575 |
catgcaataggccacatgaagatggtattgggtgag |
9030540 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 725 - 809
Target Start/End: Complemental strand, 1771619 - 1771533
Alignment:
| Q |
725 |
tgctcatcatcatctgcattctccacctct--tcctcctcctcctccatatggtgcttctcgggctggggctcaggctcgttcacct |
809 |
Q |
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||||||||||||| || ||||||||||| ||||||||||||||||||| | | ||||||||||||||||||||||| ||||| |
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| T |
1771619 |
tgctcatcatcatatgtgttctccacctccactcctcctcctcctccatataatattgctcgggctggggctcaggctcgtacacct |
1771533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.00000000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 262 - 391
Target Start/End: Complemental strand, 20626437 - 20626309
Alignment:
| Q |
262 |
gattccatgaaagtgttgaaatacaaaagcctgcaaagtcaacgacatataattattagtacaaaaaacatgaatagacatgtnnnnnnntaggcaattc |
361 |
Q |
| |
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|||||||| |||| ||||||| || || ||||| ||||||||| || ||||| |||||||| || ||||||||||| |||||| || ||||||| |
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| T |
20626437 |
gattccattaaagggttgaaaaaccaa-gcctggaaagtcaacaacctataagtattagtataagaaacatgaatatacatgtaaataaatatgcaattc |
20626339 |
T |
|
| Q |
362 |
attattatttaaacatataacaaggtcaag |
391 |
Q |
| |
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||||||||||| || | ||||| ||||||| |
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| T |
20626338 |
attattatttatacttgtaacagggtcaag |
20626309 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 355 - 461
Target Start/End: Complemental strand, 18418568 - 18418462
Alignment:
| Q |
355 |
gcaattcattattatttaaacatataacaaggtcaagtagtcagccaactataaaatcttataatgggctccaccgttaagcttcttatacaggtaagca |
454 |
Q |
| |
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||||||||||||| |||| || | ||||||||||||| ||||||| |||| ||||||||||||||||| ||| |||| ||||||||| |||| |
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| T |
18418568 |
gcaattcattattttttatacctgcgacaaggtcaagtatccagccaatcgtaaagtcttataatgggctccattgttgagctctctatacaggtgagca |
18418469 |
T |
|
| Q |
455 |
agggcag |
461 |
Q |
| |
|
||||||| |
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| T |
18418468 |
agggcag |
18418462 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 34 - 108
Target Start/End: Complemental strand, 23219871 - 23219798
Alignment:
| Q |
34 |
ttggaccttacgaggtctgtatctgagccatctagagttaagattgatttcctcaaacagacatgtttggtggtg |
108 |
Q |
| |
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||||||| |||||||||||||||||||||||||| ||| |||| |||| |||||||| |||||| |||||||| |
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| T |
23219871 |
ttggaccctacgaggtctgtatctgagccatcta-agtaaagaacgattcgctcaaacaaacatgtatggtggtg |
23219798 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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