View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17644_low_10 (Length: 272)
Name: NF17644_low_10
Description: NF17644
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17644_low_10 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 188; Significance: 1e-102; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 12 - 254
Target Start/End: Complemental strand, 6998128 - 6997875
Alignment:
| Q |
12 |
atgaaggggagtatctaatttgaagcaaaagacgataaatgaagagtaaatagaaaaagaagagatggttaacaatttgataagtatactagttgttcca |
111 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| | |
|
|
| T |
6998128 |
atgaaggagagtatctaatttgaagcaaaagacgataaatgaagagtaaatagaaaaagaagagatggttaacaatttgacaagtatactagttgttcta |
6998029 |
T |
|
| Q |
112 |
ctttattttactcatatactcccg-----------taaatgttgtttgaatatagatttagagtttttatttaactgttgtttttatagtttaagagtac |
200 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
6998028 |
ctttattttactcatatactcccgttgttcctttttaaatgttgtttgaatatagatttagagtttttatttaactgtcgtttttatagtttaagagtac |
6997929 |
T |
|
| Q |
201 |
aatctgttaattataccatttttaaattaatcttactttgtttgatatgtatgt |
254 |
Q |
| |
|
||||| ||||||||||||||| | |||||||||||||||||||||||||||||| |
|
|
| T |
6997928 |
aatctattaattataccatttctcaattaatcttactttgtttgatatgtatgt |
6997875 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 168 - 238
Target Start/End: Original strand, 31894506 - 31894576
Alignment:
| Q |
168 |
tatttaactgttgtttttatagtttaagagtacaatctgttaattataccatttttaaattaatcttactt |
238 |
Q |
| |
|
||||||||||| || || ||||||||||||||||||| | ||||||| ||||||||||||| |||||||| |
|
|
| T |
31894506 |
tatttaactgtagtattgatagtttaagagtacaatcgttcaattatatcatttttaaattactcttactt |
31894576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 163 - 222
Target Start/End: Original strand, 27907551 - 27907610
Alignment:
| Q |
163 |
gtttttatttaactgttgtttttatagtttaagagtacaatctgttaattataccatttt |
222 |
Q |
| |
|
|||| ||||||||||| ||||| ||||||||| ||| ||||||| |||||||||||||| |
|
|
| T |
27907551 |
gtttctatttaactgtcgttttgatagtttaaaggtataatctgtcaattataccatttt |
27907610 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 163 - 235
Target Start/End: Original strand, 31861415 - 31861487
Alignment:
| Q |
163 |
gtttttatttaactgttgtttttatagtttaagagtacaatctgttaattataccatttttaaattaatctta |
235 |
Q |
| |
|
|||| ||||||| ||| ||||| ||||||||||||||||| | ||||||| ||||||||||||| ||||| |
|
|
| T |
31861415 |
gtttctatttaattgtcgttttgtaagtttaagagtacaatccatcaattatatcatttttaaattactctta |
31861487 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 228
Target Start/End: Original strand, 4674700 - 4674750
Alignment:
| Q |
178 |
ttgtttttatagtttaagagtacaatctgttaattataccatttttaaatt |
228 |
Q |
| |
|
||||||| || ||||||||||||||| ||||||||||||| ||||| |||| |
|
|
| T |
4674700 |
ttgttttgattgtttaagagtacaatttgttaattatacccttttttaatt |
4674750 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 164 - 238
Target Start/End: Original strand, 21082857 - 21082931
Alignment:
| Q |
164 |
tttttatttaactgttgtttttatagtttaagagtacaatctgttaattataccatttttaaattaatcttactt |
238 |
Q |
| |
|
||||||||||||||| ||||| ||||||||| |||||||| | | |||||||| |||| | ||||| || ||||| |
|
|
| T |
21082857 |
tttttatttaactgtcgttttaatagtttaaaagtacaatttatcaattatacaatttctcaattattcatactt |
21082931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 164 - 216
Target Start/End: Original strand, 20769490 - 20769542
Alignment:
| Q |
164 |
tttttatttaactgttgtttttatagtttaagagtacaatctgttaattatac |
216 |
Q |
| |
|
||||||||||||||| ||||| ||||||||| |||||||| | | |||||||| |
|
|
| T |
20769490 |
tttttatttaactgtcgttttaatagtttaaaagtacaatttatcaattatac |
20769542 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 164 - 216
Target Start/End: Complemental strand, 1437115 - 1437063
Alignment:
| Q |
164 |
tttttatttaactgttgtttttatagtttaagagtacaatctgttaattatac |
216 |
Q |
| |
|
||||||||||||||| ||||| |||| |||| |||||||| ||| |||||||| |
|
|
| T |
1437115 |
tttttatttaactgtcgttttgatagcttaaaagtacaatttgtcaattatac |
1437063 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University