View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17644_low_13 (Length: 235)
Name: NF17644_low_13
Description: NF17644
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17644_low_13 |
 | |
|
| [»] scaffold0294 (1 HSPs) |
| | |
|
| [»] scaffold0813 (1 HSPs) |
| | |
|
| [»] scaffold0286 (1 HSPs) |
| | |
|
| [»] scaffold0373 (1 HSPs) |
| | |
|
| [»] scaffold0552 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 196; Significance: 1e-107; HSPs: 24)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 5102960 - 5102741
Alignment:
| Q |
1 |
atgtctgttcttgcagaggatggaaaagctgaaaattctaaatcttagtcattctcattgtctgacgcacaccccagacttttcatacatgcctaatctt |
100 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||| |
|
|
| T |
5102960 |
atgtctgttcttgcagaggttggaaaagctgaaaattctaaatcttagtcattctcattgtctgacgcacacccctgacttttcatacttgcctaatctt |
5102861 |
T |
|
| Q |
101 |
gagaagctggtactcaaagattgtccaatgttgtctgaggtttctcctactattggagatctcactgaaatacttctaatagatttggaagattgtgttg |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5102860 |
gagaagctggtactcaaagattgtccaatgttgtctgaggtttgtcctaccattggagatctcactgaaatacttctaatagatttggaagattgtgtta |
5102761 |
T |
|
| Q |
201 |
gccttcgtagccttccaaga |
220 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
5102760 |
gccttcgtagccttccaaga |
5102741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 5157974 - 5157755
Alignment:
| Q |
1 |
atgtctgttcttgcagaggatggaaaagctgaaaattctaaatcttagtcattctcattgtctgacgcacaccccagacttttcatacatgcctaatctt |
100 |
Q |
| |
|
||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5157974 |
atgtctgttcttgcagatgatggaaaagctaaaaattctaaatcttagtcattctcattgtctgacgcacaccccagacttttcatacatgcctaatctt |
5157875 |
T |
|
| Q |
101 |
gagaagctggtactcaaagattgtccaatgttgtctgaggtttctcctactattggagatctcactgaaatacttctaatagatttggaagattgtgttg |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||| |||||| ||||||||||||||||||||||||||| |
|
|
| T |
5157874 |
gagaagctggtactcaaagattgtccaatgttgtctgaggtttctcctagcattggaaatctcagtgaaattcttctaatagatttggaagattgtgtta |
5157775 |
T |
|
| Q |
201 |
gccttcgtagccttccaaga |
220 |
Q |
| |
|
||||||| |||||||||||| |
|
|
| T |
5157774 |
gccttcgaagccttccaaga |
5157755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 5096443 - 5096659
Alignment:
| Q |
1 |
atgtctgttcttgcagaggatggaaaagctgaaaattctaaatcttagtcattctcattgtctgacgcacaccccagacttttcatacatgcctaatctt |
100 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
5096443 |
atgtctgttcttgcagaggatggaaaaactgaaaattctaaatcttagtcattctcattgtctgacacacaccccagacttttcatacatgcctaatctt |
5096542 |
T |
|
| Q |
101 |
gagaagctggtactcaaagattgtccaatgttgtctgaggtttctcctactattggagatctcactgaaatacttctaatagatttggaagattgtgttg |
200 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||| |||||| |||||| |||||| ||||||||||||||||||||||||||| |
|
|
| T |
5096543 |
gagaagctggtacttaaagattgtccaatgttgtctgaggtttctcctagcattggaaatctcagtgaaattcttctaatagatttggaagattgtgtta |
5096642 |
T |
|
| Q |
201 |
gccttcgtagccttcca |
217 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
5096643 |
gccttcgtagccttcca |
5096659 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 5067040 - 5066821
Alignment:
| Q |
1 |
atgtctgttcttgcagaggatggaaaagctgaaaattctaaatcttagtcattctcattgtctgacgcacaccccagacttttcatacatgcctaatctt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||| ||||||||||| |||||||||||| |
|
|
| T |
5067040 |
atgtctgttcttgcagaggatggaaaagctgaaaattctaaatcttagccattctcattgtctgatgcacacccctgacttttcatatatgcctaatctt |
5066941 |
T |
|
| Q |
101 |
gagaagctggtactcaaagattgtccaatgttgtctgaggtttctcctactattggagatctcactgaaatacttctaatagatttggaagattgtgttg |
200 |
Q |
| |
|
|| ||||| |||||||||||||||||||| ||||| |||||||||||||| || ||| | |||| |||||| ||||||||||||||||||||||||||| |
|
|
| T |
5066940 |
gaaaagctagtactcaaagattgtccaatattgtccgaggtttctcctacaataggaaaactcagtgaaattcttctaatagatttggaagattgtgtta |
5066841 |
T |
|
| Q |
201 |
gccttcgtagccttccaaga |
220 |
Q |
| |
|
||||||||| |||||||||| |
|
|
| T |
5066840 |
gccttcgtaaccttccaaga |
5066821 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 5244213 - 5243994
Alignment:
| Q |
1 |
atgtctgttcttgcagaggatggaaaagctgaaaattctaaatcttagtcattctcattgtctgacgcacaccccagacttttcatacatgcctaatctt |
100 |
Q |
| |
|
||||||||||||| || |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| |
|
|
| T |
5244213 |
atgtctgttcttgtggatgatggaaaagctaaaaattctaaatcttagtcattctcattgtctgacgcacaccccagacttttcatacatgtcaaatctt |
5244114 |
T |
|
| Q |
101 |
gagaagctggtactcaaagattgtccaatgttgtctgaggtttctcctactattggagatctcactgaaatacttctaatagatttggaagattgtgttg |
200 |
Q |
| |
|
|| ||||| ||||||||||||||| || ||||||| ||| ||||||||| ||||| |||||| |||||| ||||||||||||||||||||||||||| |
|
|
| T |
5244113 |
gaaaagctagtactcaaagattgttcagtgttgtccgagatttctcctagcattgggaatctcagtgaaattcttctaatagatttggaagattgtgtta |
5244014 |
T |
|
| Q |
201 |
gccttcgtagccttccaaga |
220 |
Q |
| |
|
||||||| |||||||||||| |
|
|
| T |
5244013 |
gccttcgaagccttccaaga |
5243994 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 18 - 220
Target Start/End: Original strand, 5350148 - 5350348
Alignment:
| Q |
18 |
ggatggaaaagctgaaaattctaaatcttagtcattctcattgtctgacgcacaccccagacttttcatacatgcctaatcttgagaagctggtactcaa |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| |||||||||||||||||||||||||| ||||| |||||||| |
|
|
| T |
5350148 |
ggatggaaaagctgaaaattctaaatcttagtcattcttgttgtctgacacacaccc--gacttttcatacatgcctaatcttgaaaagctagtactcaa |
5350245 |
T |
|
| Q |
118 |
agattgtccaatgttgtctgaggtttctcctactattggagatctcactgaaatacttctaatagatttggaagattgtgttggccttcgtagccttcca |
217 |
Q |
| |
|
|||||||||||||||||| ||||||||||||| ||||||||||||| |||||| ||||||||||||||||| ||||||||| |||||| ||||||||| |
|
|
| T |
5350246 |
agattgtccaatgttgtccgaggtttctcctagcattggagatctcagtgaaattcttctaatagatttggaggattgtgttagccttcaaagccttcca |
5350345 |
T |
|
| Q |
218 |
aga |
220 |
Q |
| |
|
||| |
|
|
| T |
5350346 |
aga |
5350348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 5 - 220
Target Start/End: Original strand, 5425649 - 5425864
Alignment:
| Q |
5 |
ctgttcttgcagaggatggaaaagctgaaaattctaaatcttagtcattctcattgtctgacgcacaccccagacttttcatacatgcctaatcttgaga |
104 |
Q |
| |
|
||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||| ||| ||||||||||||||| | |
|
|
| T |
5425649 |
ctgtttttgcagtggatggaaaagctgaaaattctaaatcttagtcattctcattgtctgacgcgcacccctgactttacattcatgcctaatcttgaaa |
5425748 |
T |
|
| Q |
105 |
agctggtactcaaagattgtccaatgttgtctgaggtttctcctactattggagatctcactgaaatacttctaatagatttggaagattgtgttggcct |
204 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||| ||||||||| |||||| |||||| ||||| ||||||||| |||| |||||||||||| |||| |
|
|
| T |
5425749 |
agctggtgctcaaagattgtccaatgttgtctgagatttctcctagcattggaaatctcagagaaattcttctaataaatttagaagattgtgttcgcct |
5425848 |
T |
|
| Q |
205 |
tcgtagccttccaaga |
220 |
Q |
| |
|
|| |||||||||||| |
|
|
| T |
5425849 |
tcaaagccttccaaga |
5425864 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 6 - 220
Target Start/End: Original strand, 5370311 - 5370525
Alignment:
| Q |
6 |
tgttcttgcagaggatggaaaagctgaaaattctaaatcttagtcattctcattgtctgacgcacaccccagacttttcatacatgcctaatcttgagaa |
105 |
Q |
| |
|
|||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| || |
|
|
| T |
5370311 |
tgttcttgcagatgatggaaaagctaaaaattctaaatcttagtcattctcattgtctgacgcacaccccagacttttcatacttgcctaagcttgaaaa |
5370410 |
T |
|
| Q |
106 |
gctggtactcaaagattgtccaatgttgtctgaggtttctcctactattggagatctcactgaaatacttctaatagatttggaagattgtgttggcctt |
205 |
Q |
| |
|
| | ||||||||||||||| ||||| |||||||||||||||||| ||||| ||||| ||||| |||||||||||||| |||||||||||| ||||| |
|
|
| T |
5370411 |
gttagtactcaaagattgttcaatgctgtctgaggtttctcctagcattgggaatctcggcgaaattcttctaatagattttgaagattgtgttagcctt |
5370510 |
T |
|
| Q |
206 |
cgtagccttccaaga |
220 |
Q |
| |
|
|||| |||||||||| |
|
|
| T |
5370511 |
cgtaaccttccaaga |
5370525 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 6 - 204
Target Start/End: Original strand, 5447327 - 5447525
Alignment:
| Q |
6 |
tgttcttgcagaggatggaaaagctgaaaattctaaatcttagtcattctcattgtctgacgcacaccccagacttttcatacatgcctaatcttgagaa |
105 |
Q |
| |
|
|||||||||||||||||||||| ||||||| ||| |||||||||||||||||| ||||||| ||| ||| |||||||||| | ||||||||||||| || |
|
|
| T |
5447327 |
tgttcttgcagaggatggaaaatctgaaaaatctcaatcttagtcattctcatcgtctgacaaacatcccggacttttcatgcttgcctaatcttgaaaa |
5447426 |
T |
|
| Q |
106 |
gctggtactcaaagattgtccaatgttgtctgaggtttctcctactattggagatctcactgaaatacttctaatagatttggaagattgtgttggcct |
204 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||| |||||| |||||| | |||| ||||| ||| |||||||||||||| ||||||| |
|
|
| T |
5447427 |
gctagtactcaaagattgtccaatgttgtctgaggtttctcctagcattggacatctcaataaaattcttctgataaatttggaagattgtattggcct |
5447525 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 6 - 220
Target Start/End: Complemental strand, 5128758 - 5128544
Alignment:
| Q |
6 |
tgttcttgcagaggatggaaaagctgaaaattctaaatcttagtcattctcattgtctgacgcacaccccagacttttcatacatgcctaatcttgagaa |
105 |
Q |
| |
|
|||||||||||| |||||| |||||||||||||| |||| ||||||||||||||||||||| |||||||||||||||||||| | ||||||||||| || |
|
|
| T |
5128758 |
tgttcttgcagatgatggagaagctgaaaattctcaatcatagtcattctcattgtctgacacacaccccagacttttcatatttacctaatcttgaaaa |
5128659 |
T |
|
| Q |
106 |
gctggtactcaaagattgtccaatgttgtctgaggtttctcctactattggagatctcactgaaatacttctaatagatttggaagattgtgttggcctt |
205 |
Q |
| |
|
||| ||||||||||||||| |||||||||||||||||||| ||| || ||| |||||| | |||| ||||| ||| ||||||||||||| || |||| |
|
|
| T |
5128658 |
gctagtactcaaagattgttcaatgttgtctgaggtttctactagcatcggacatctcaataaaattcttctgataaatttggaagattgcattagccta |
5128559 |
T |
|
| Q |
206 |
cgtagccttccaaga |
220 |
Q |
| |
|
||||||| |||||| |
|
|
| T |
5128558 |
tgtagcctcccaaga |
5128544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 6 - 220
Target Start/End: Original strand, 5278306 - 5278520
Alignment:
| Q |
6 |
tgttcttgcagaggatggaaaagctgaaaattctaaatcttagtcattctcattgtctgacgcacaccccagacttttcatacatgcctaatcttgagaa |
105 |
Q |
| |
|
||||||||||||||||||| |||||||||||||| ||||||||||||||||||| |||||| | ||||||||||||||| |||||||||||||||| || |
|
|
| T |
5278306 |
tgttcttgcagaggatggagaagctgaaaattcttaatcttagtcattctcattatctgacagagaccccagacttttcaaacatgcctaatcttgaaaa |
5278405 |
T |
|
| Q |
106 |
gctggtactcaaagattgtccaatgttgtctgaggtttctcctactattggagatctcactgaaatacttctaatagatttggaagattgtgttggcctt |
205 |
Q |
| |
|
||| |||||| |||||| |||| ||||| ||||||||||| || |||||| ||||| | |||| ||||| ||| | |||||||||||| || ||||| |
|
|
| T |
5278406 |
gcttatactcatagattgcccaaggttgtgtgaggtttctcatagcattggatatctcgataaaattcttctgataaacttggaagattgtattagcctt |
5278505 |
T |
|
| Q |
206 |
cgtagccttccaaga |
220 |
Q |
| |
|
| || ||||||||| |
|
|
| T |
5278506 |
cagagtcttccaaga |
5278520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 186
Target Start/End: Complemental strand, 5354960 - 5354775
Alignment:
| Q |
1 |
atgtctgttcttgcagaggatggaaaagctgaaaattctaaatcttagtcattctcattgtctgacgcacaccccagacttttcatacatgcctaatctt |
100 |
Q |
| |
|
|||| ||||||||||||| ||||| | ||||||||||| |||||||||||||| ||||||||||| || ||||| |||||||| ||||||||||||||| |
|
|
| T |
5354960 |
atgtatgttcttgcagagaatggagcatctgaaaattctcaatcttagtcattcacattgtctgacacatacccctgacttttcttacatgcctaatctt |
5354861 |
T |
|
| Q |
101 |
gagaagctggtactcaaagattgtccaatgttgtctgaggtttctcctactattggagatctcactgaaatacttctaatagattt |
186 |
Q |
| |
|
|| ||||| ||||||||||||||||||||||| ||||| |||||||| | |||||| |||||| | |||| ||||| ||| |||| |
|
|
| T |
5354860 |
gaaaagcttgtactcaaagattgtccaatgttatctgaagtttctccaagcattggacatctcaataaaattcttctgataaattt |
5354775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 14 - 220
Target Start/End: Complemental strand, 5074241 - 5074035
Alignment:
| Q |
14 |
cagaggatggaaaagctgaaaattctaaatcttagtcattctcattgtctgacgcacaccccagacttttcatacatgcctaatcttgagaagctggtac |
113 |
Q |
| |
|
|||||| |||| ||||||||||| || ||||||||||||||||||| ||||||||| || ||||| |||||| || ||||||||||||| | || |||| |
|
|
| T |
5074241 |
cagaggttggagaagctgaaaatactcaatcttagtcattctcattatctgacgcaaactccagatttttcaaacttgcctaatcttgaacaactagtac |
5074142 |
T |
|
| Q |
114 |
tcaaagattgtccaatgttgtctgaggtttctcctactattggagatctcactgaaatacttctaatagatttggaagattgtgttggccttcgtagcct |
213 |
Q |
| |
|
||| ||||||||||| |||||| |||||||||| || ||||| | |||||| | |||| ||||| ||| |||||||||||||| |||| |||| ||||| |
|
|
| T |
5074141 |
tcacagattgtccaaggttgtcagaggtttctcatagtattgaacatctcaataaaattcttctgataaatttggaagattgtattggtcttcagagcct |
5074042 |
T |
|
| Q |
214 |
tccaaga |
220 |
Q |
| |
|
||||||| |
|
|
| T |
5074041 |
tccaaga |
5074035 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #14
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 6 - 220
Target Start/End: Original strand, 5176479 - 5176693
Alignment:
| Q |
6 |
tgttcttgcagaggatggaaaagctgaaaattctaaatcttagtcattctcattgtctgacgcacaccccagacttttcatacatgcctaatcttgagaa |
105 |
Q |
| |
|
||||||||||||||||||| |||||||||||||| ||||||||||||||||||| |||||| | ||||||||||||||| |||||||||||||||| || |
|
|
| T |
5176479 |
tgttcttgcagaggatggagaagctgaaaattcttaatcttagtcattctcattatctgacagagaccccagacttttcaaacatgcctaatcttgaaaa |
5176578 |
T |
|
| Q |
106 |
gctggtactcaaagattgtccaatgttgtctgaggtttctcctactattggagatctcactgaaatacttctaatagatttggaagattgtgttggcctt |
205 |
Q |
| |
|
||| |||||| |||||| |||| |||| ||||||||| | || |||||| ||||| | |||| ||||| ||| | |||||||||||| || ||||| |
|
|
| T |
5176579 |
gcttatactcatagattgcccaaggttgcgtgaggtttcccatagcattggacatctcgataaaattcttctgataaacttggaagattgtattagcctt |
5176678 |
T |
|
| Q |
206 |
cgtagccttccaaga |
220 |
Q |
| |
|
| || ||||||||| |
|
|
| T |
5176679 |
cagagtcttccaaga |
5176693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #15
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 4 - 220
Target Start/End: Complemental strand, 5182270 - 5182054
Alignment:
| Q |
4 |
tctgttcttgcagaggatggaaaagctgaaaattctaaatcttagtcattctcattgtctgacgcacaccccagacttttcatacatgcctaatcttgag |
103 |
Q |
| |
|
|||||||||||||||| |||| |||||||||||||| ||||||||||||||||||| |||| | | || |||||||||||| || ||||||| ||||| |
|
|
| T |
5182270 |
tctgttcttgcagaggctggagaagctgaaaattctcaatcttagtcattctcattttctgtcaaagactccagacttttcaaacttgcctaaccttgaa |
5182171 |
T |
|
| Q |
104 |
aagctggtactcaaagattgtccaatgttgtctgaggtttctcctactattggagatctcactgaaatacttctaatagatttggaagattgtgttggcc |
203 |
Q |
| |
|
|| | ||||||| ||||||||| | ||||||||| ||||| | | |||||||||||||| | |||||||| | ||| ||||||||||||| || ||| |
|
|
| T |
5182170 |
cagttagtactcacagattgtccgaagttgtctgaagtttcccaaagtattggagatctcaataaaatacttttgataaatttggaagattgcattagcc |
5182071 |
T |
|
| Q |
204 |
ttcgtagccttccaaga |
220 |
Q |
| |
|
||| |||||||||||| |
|
|
| T |
5182070 |
ttcaaagccttccaaga |
5182054 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #16
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 6 - 189
Target Start/End: Original strand, 5396690 - 5396873
Alignment:
| Q |
6 |
tgttcttgcagaggatggaaaagctgaaaattctaaatcttagtcattctcattgtctgacgcacaccccagacttttcatacatgcctaatcttgagaa |
105 |
Q |
| |
|
|||||||||||||| |||| |||||||||||||| ||||||||||||||||||| | |||| || ||||||||||||||| |||||||||||||||| | |
|
|
| T |
5396690 |
tgttcttgcagaggctggagaagctgaaaattctcaatcttagtcattctcattatttgacacagaccccagacttttcaaacatgcctaatcttgaaca |
5396789 |
T |
|
| Q |
106 |
gctggtactcaaagattgtccaatgttgtctgaggtttctcctactattggagatctcactgaaatacttctaatagatttgga |
189 |
Q |
| |
|
|| ||| ||| |||||||||| |||||| || ||||| | || |||||||||||| | |||||||||||||| ||||||| |
|
|
| T |
5396790 |
actagtagtcactgattgtccaaagttgtcagaagtttcccataatattggagatctgaaaaaaatacttctaataaatttgga |
5396873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #17
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 6 - 220
Target Start/End: Complemental strand, 5147237 - 5147023
Alignment:
| Q |
6 |
tgttcttgcagaggatggaaaagctgaaaattctaaatcttagtcattctcattgtctgacgcacaccccagacttttcatacatgcctaatcttgagaa |
105 |
Q |
| |
|
||||||||||||||||||| ||||| |||||||| || |||||||| ||||||| | |||| || |||||| |||||| | || ||||||||||||| | |
|
|
| T |
5147237 |
tgttcttgcagaggatggagaagctaaaaattctcaagcttagtcactctcattatttgacacagaccccaaactttttaaacttgcctaatcttgaaca |
5147138 |
T |
|
| Q |
106 |
gctggtactcaaagattgtccaatgttgtctgaggtttctcctactattggagatctcactgaaatacttctaatagatttggaagattgtgttggcctt |
205 |
Q |
| |
|
|| |||||| |||||||||||||||||||| ||||||| || ||||||| |||||| | |||| ||||| ||| |||||||||||||| | ||||| |
|
|
| T |
5147137 |
actagtactctctgattgtccaatgttgtctgaagtttctcatagtattggatatctcaataaaattcttctgataaatttggaagattgtactagcctt |
5147038 |
T |
|
| Q |
206 |
cgtagccttccaaga |
220 |
Q |
| |
|
|| || ||||||||| |
|
|
| T |
5147037 |
cgaagtcttccaaga |
5147023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #18
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 6 - 204
Target Start/End: Original strand, 5433775 - 5433973
Alignment:
| Q |
6 |
tgttcttgcagaggatggaaaagctgaaaattctaaatcttagtcattctcattgtctgacgcacaccccagacttttcatacatgcctaatcttgagaa |
105 |
Q |
| |
|
||||||||||||| ||||| |||||||||||||| || |||||||||| ||||| |||||| || || |||||||||||| | ||||||||||||| || |
|
|
| T |
5433775 |
tgttcttgcagagaatggagaagctgaaaattcttaaccttagtcattgtcattatctgacacaaacaccagacttttcaaatttgcctaatcttgaaaa |
5433874 |
T |
|
| Q |
106 |
gctggtactcaaagattgtccaatgttgtctgaggtttctcctactattggagatctcactgaaatacttctaatagatttggaagattgtgttggcct |
204 |
Q |
| |
|
| | ||||||| ||||||||||| | |||||| ||||||||| ||||| |||||| |||||| ||||| ||| |||||||||||||| ||||||| |
|
|
| T |
5433875 |
gttagtactcacagattgtccaagtctttctgagatttctcctagcattggccatctcaatgaaattcttctgataaatttggaagattgtattggcct |
5433973 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #19
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 8 - 220
Target Start/End: Complemental strand, 5690498 - 5690286
Alignment:
| Q |
8 |
ttcttgcagaggatggaaaagctgaaaattctaaatcttagtcattctcattgtctgacgcacaccccagacttttcatacatgcctaatcttgagaagc |
107 |
Q |
| |
|
|||||| ||| |||||| ||||| |||||||| ||||||||||| ||||||| |||||| || ||||||||||||||| ||||||||||||||| |||| |
|
|
| T |
5690498 |
ttcttgtagatgatggagaagcttaaaattctcaatcttagtcactctcattatctgacacagaccccagacttttcaatcatgcctaatcttgaaaagc |
5690399 |
T |
|
| Q |
108 |
tggtactcaaagattgtccaatgttgtctgaggtttctcctactattggagatctcactgaaatacttctaatagatttggaagattgtgttggccttcg |
207 |
Q |
| |
|
| |||||||||||||||||| |||| ||||||||| | || |||||| ||||| |||| ||||| ||| |||||||||||||| || ||||| |
|
|
| T |
5690398 |
taatactcaaagattgtccaaggttgcgtgaggtttcccatagcattggacatctcgacaaaattcttctgataaatttggaagattgtattagcctttc |
5690299 |
T |
|
| Q |
208 |
tagccttccaaga |
220 |
Q |
| |
|
|| |||||||||| |
|
|
| T |
5690298 |
taaccttccaaga |
5690286 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #20
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 6 - 220
Target Start/End: Original strand, 5383066 - 5383280
Alignment:
| Q |
6 |
tgttcttgcagaggatggaaaagctgaaaattctaaatcttagtcattctcattgtctgacgcacaccccagacttttcatacatgcctaatcttgagaa |
105 |
Q |
| |
|
||||||||||||||||||| | |||||||| ||||| |||||||||||||||| ||| ||| ||||||||||| ||| | ||||||||||||| || |
|
|
| T |
5383066 |
tgttcttgcagaggatggagatactgaaaatcctaaaccttagtcattctcattacctggtgcagaccccagacttctcaaatttgcctaatcttgaaaa |
5383165 |
T |
|
| Q |
106 |
gctggtactcaaagattgtccaatgttgtctgaggtttctcctactattggagatctcactgaaatacttctaatagatttggaagattgtgttggcctt |
205 |
Q |
| |
|
||| |||||| ||||||||| | |||||| ||||||||||||| ||||||||||||| |||| ||||| || |||||||||| |||||| |||| |
|
|
| T |
5383166 |
gctagtactcgcagattgtccgaggttgtccgaggtttctcctagcattggagatctcaagaaaattcttctgattaatttggaagactgtgttagccta |
5383265 |
T |
|
| Q |
206 |
cgtagccttccaaga |
220 |
Q |
| |
|
||||||| |||||| |
|
|
| T |
5383266 |
tgtagcctcccaaga |
5383280 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #21
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 6 - 164
Target Start/End: Complemental strand, 5284730 - 5284572
Alignment:
| Q |
6 |
tgttcttgcagaggatggaaaagctgaaaattctaaatcttagtcattctcattgtctgacgcacaccccagacttttcatacatgcctaatcttgagaa |
105 |
Q |
| |
|
||||||||||||||||||| |||||||||||||| |||||||||||||| |||| ||| || | | ||| |||||||| |||||||||||||||| || |
|
|
| T |
5284730 |
tgttcttgcagaggatggagaagctgaaaattctcaatcttagtcattcccattatctcacacgaagccctgacttttcgaacatgcctaatcttgaaaa |
5284631 |
T |
|
| Q |
106 |
gctggtactcaaagattgtccaatgttgtctgaggtttctcctactattggagatctca |
164 |
Q |
| |
|
||| || |||||||||||||||| | | ||||||||||| |||| |||||| |||||| |
|
|
| T |
5284630 |
gctagtgctcaaagattgtccaaggctatctgaggtttcacctagcattggaaatctca |
5284572 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #22
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 6 - 130
Target Start/End: Complemental strand, 5257675 - 5257551
Alignment:
| Q |
6 |
tgttcttgcagaggatggaaaagctgaaaattctaaatcttagtcattctcattgtctgacgcacaccccagacttttcatacatgcctaatcttgagaa |
105 |
Q |
| |
|
||||||||||||||||||| |||||||||||||| |||||||||||||| | |||||| || | ||| |||||||| |||||||||||||||| || |
|
|
| T |
5257675 |
tgttcttgcagaggatggagaagctgaaaattctcaatcttagtcattcccgttgtctcacaagaagccctgacttttccaacatgcctaatcttgaaaa |
5257576 |
T |
|
| Q |
106 |
gctggtactcaaagattgtccaatg |
130 |
Q |
| |
|
| | ||||||||||||||||||||| |
|
|
| T |
5257575 |
gttagtactcaaagattgtccaatg |
5257551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #23
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 6 - 149
Target Start/End: Original strand, 5446897 - 5447040
Alignment:
| Q |
6 |
tgttcttgcagaggatggaaaagctgaaaattctaaatcttagtcattctcattgtctgacgcacaccccagacttttcatacatgcctaatcttgagaa |
105 |
Q |
| |
|
||||||||||||||||||| ||||| |||||||| |||||||| ||||| || | ||| || || | ||| ||||||||| ||| |||||||||| | || |
|
|
| T |
5446897 |
tgttcttgcagaggatggagaagctaaaaattctcaatcttagccattcgcactatctcacacaaagccctgacttttcaaacacgcctaatcttcaaaa |
5446996 |
T |
|
| Q |
106 |
gctggtactcaaagattgtccaatgttgtctgaggtttctccta |
149 |
Q |
| |
|
|| |||||||||||||| ||| |||||||||||||||| |||| |
|
|
| T |
5446997 |
actagtactcaaagattgcccactgttgtctgaggtttcaccta |
5447040 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #24
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 6 - 220
Target Start/End: Original strand, 5344601 - 5344815
Alignment:
| Q |
6 |
tgttcttgcagaggatggaaaagctgaaaattctaaatcttagtcattctcattgtctgacgcacaccccagacttttcatacatgcctaatcttgagaa |
105 |
Q |
| |
|
||||||| |||| |||||| |||||||||||||| ||||||||||||||||||| |||| || ||||| |||||||| ||| | ||||||||||| || |
|
|
| T |
5344601 |
tgttcttacagatgatggagaagctgaaaattctcaatcttagtcattctcattacctgatacaaaccccggacttttcttacttacctaatcttgaaaa |
5344700 |
T |
|
| Q |
106 |
gctggtactcaaagattgtccaatgttgtctgaggtttctcctactattggagatctcactgaaatacttctaatagatttggaagattgtgttggcctt |
205 |
Q |
| |
|
| | |||||| |||||||||| |||| |||| |||||| || ||||||||||||| |||| ||||| || |||||||||| ||| || |||| |
|
|
| T |
5344701 |
gttagtactcgtggattgtccaagtttgtgtgagatttctcatagcattggagatctcaagaaaattcttctcattaatttggaagactgtattagccta |
5344800 |
T |
|
| Q |
206 |
cgtagccttccaaga |
220 |
Q |
| |
|
||||||| |||||| |
|
|
| T |
5344801 |
tgtagcctgccaaga |
5344815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0294 (Bit Score: 136; Significance: 4e-71; HSPs: 1)
Name: scaffold0294
Description:
Target: scaffold0294; HSP #1
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 9 - 220
Target Start/End: Complemental strand, 9238 - 9027
Alignment:
| Q |
9 |
tcttgcagaggatggaaaagctgaaaattctaaatcttagtcattctcattgtctgacgcacaccccagacttttcatacatgcctaatcttgagaagct |
108 |
Q |
| |
|
||||||||||| ||| |||||||||||||| ||||||||||||||||||| | ||| ||| ||||||||||||||||| ||||||||||||| ||||| |
|
|
| T |
9238 |
tcttgcagaggctggcgaagctgaaaattctcaatcttagtcattctcattatttgatgcataccccagacttttcatatttgcctaatcttgaaaagct |
9139 |
T |
|
| Q |
109 |
ggtactcaaagattgtccaatgttgtctgaggtttctcctactattggagatctcactgaaatacttctaatagatttggaagattgtgttggccttcgt |
208 |
Q |
| |
|
|||||||||||||||||||||||| | |||||||||| ||| |||||||||||| |||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
9138 |
agtactcaaagattgtccaatgttgaccgaggtttctcataccattggagatctcggtgaaatacttctaatagatttggaagattgtgttagccttcgt |
9039 |
T |
|
| Q |
209 |
agccttccaaga |
220 |
Q |
| |
|
|||||||||||| |
|
|
| T |
9038 |
agccttccaaga |
9027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 93; Significance: 2e-45; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 4 - 216
Target Start/End: Complemental strand, 36214172 - 36213960
Alignment:
| Q |
4 |
tctgttcttgcagaggatggaaaagctgaaaattctaaatcttagtcattctcattgtctgacgcacaccccagacttttcatacatgcctaatcttgag |
103 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||| ||||||||||||||||||| |||||| | || ||||| |||||| |||||||||| ||||| |
|
|
| T |
36214172 |
tctgttcttgcagaggctggaaaagctgaaaattctcaatcttagtcattctcattatctgacaaagactccagatttttcaaacatgcctaaccttgaa |
36214073 |
T |
|
| Q |
104 |
aagctggtactcaaagattgtccaatgttgtctgaggtttctcctactattggagatctcactgaaatacttctaatagatttggaagattgtgttggcc |
203 |
Q |
| |
|
|| || ||||||| ||||||||||| |||||||||||||| | | ||||||| |||||| | || | ||||||||| |||||||||||||| || ||| |
|
|
| T |
36214072 |
aaactagtactcacagattgtccaagattgtctgaggtttcccacagtattggacatctcaataaagttcttctaataaatttggaagattgtattagcc |
36213973 |
T |
|
| Q |
204 |
ttcgtagccttcc |
216 |
Q |
| |
|
||| |||||||| |
|
|
| T |
36213972 |
ttcaaagccttcc |
36213960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 27 - 128
Target Start/End: Complemental strand, 34724906 - 34724805
Alignment:
| Q |
27 |
agctgaaaattctaaatcttagtcattctcattgtctgacgcacaccccagacttttcatacatgcctaatcttgagaagctggtactcaaagattgtcc |
126 |
Q |
| |
|
|||||||| |||| |||||||||||||||||| ||| || || ||||||||||||||| |||| |||||||| ||| | |||||||||||||||| |
|
|
| T |
34724906 |
agctgaaatttcttaatcttagtcattctcataacttgaaacaaacaccagacttttcatacttgccaaatcttgaaaagttaatactcaaagattgtcc |
34724807 |
T |
|
| Q |
127 |
aa |
128 |
Q |
| |
|
|| |
|
|
| T |
34724806 |
aa |
34724805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 87; Significance: 8e-42; HSPs: 17)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 4 - 162
Target Start/End: Complemental strand, 4124282 - 4124124
Alignment:
| Q |
4 |
tctgttcttgcagaggatggaaaagctgaaaattctaaatcttagtcattctcattgtctgacgcacaccccagacttttcatacatgcctaatcttgag |
103 |
Q |
| |
|
||||||||||||||| ||||| ||||||||||||| ||||||||||||||||||| |||||| || ||||| |||||||||||| ||||||| ||||| |
|
|
| T |
4124282 |
tctgttcttgcagagaatggagcagctgaaaattctcaatcttagtcattctcattatctgacacagacccctgacttttcatacttgcctaaccttgaa |
4124183 |
T |
|
| Q |
104 |
aagctggtactcaaagattgtccaatgttgtctgaggtttctcctactattggagatct |
162 |
Q |
| |
|
||||||||||||||||||||||||| | |||||||||| || | ||| |||||| |||| |
|
|
| T |
4124182 |
aagctggtactcaaagattgtccaaggctgtctgaggtatcccatacaattggacatct |
4124124 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 7 - 220
Target Start/End: Original strand, 4344387 - 4344600
Alignment:
| Q |
7 |
gttcttgcagaggatggaaaagctgaaaattctaaatcttagtcattctcattgtctgacgcacaccccagacttttcatacatgcctaatcttgagaag |
106 |
Q |
| |
|
|||||||||||||||||| ||||||||||||| ||||| |||||||||||||||||||| || || || |||||||||||| ||||||||||||| ||| |
|
|
| T |
4344387 |
gttcttgcagaggatggatcagctgaaaattctcaatctcagtcattctcattgtctgacacagacgcctgacttttcatacttgcctaatcttgaaaag |
4344486 |
T |
|
| Q |
107 |
ctggtactcaaagattgtccaatgttgtctgaggtttctcctactattggagatctcactgaaatacttctaatagatttggaagattgtgttggccttc |
206 |
Q |
| |
|
|| ||||||||||||||||||| | |||||||| |||| | | ||||||| |||||| |||| ||| | ||| ||||| || ||||| || ||||| |
|
|
| T |
4344487 |
ctagtactcaaagattgtccaaggctgtctgagatttcccaaagtattggacatctcaacaaaattcttttgataaatttgaaaaattgtattagccttt |
4344586 |
T |
|
| Q |
207 |
gtagccttccaaga |
220 |
Q |
| |
|
||| |||||||||| |
|
|
| T |
4344587 |
gtaaccttccaaga |
4344600 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 8 - 162
Target Start/End: Original strand, 4335087 - 4335241
Alignment:
| Q |
8 |
ttcttgcagaggatggaaaagctgaaaattctaaatcttagtcattctcattgtctgacgcacaccccagacttttcatacatgcctaatcttgagaagc |
107 |
Q |
| |
|
||||||||||||||||| || |||||||||| ||||||||||||||||||| ||| || || ||||| || ||||||||| ||||||||||||| || | |
|
|
| T |
4335087 |
ttcttgcagaggatggagcagttgaaaattctcaatcttagtcattctcattatctaacacagacccctgatttttcatacttgcctaatcttgaaaacc |
4335186 |
T |
|
| Q |
108 |
tggtactcaaagattgtccaatgttgtctgaggtttctcctactattggagatct |
162 |
Q |
| |
|
| ||||||||||||||||| | | |||||||||| || | ||| |||||| |||| |
|
|
| T |
4335187 |
tagtactcaaagattgtccgaggctgtctgaggtatcccatacaattggacatct |
4335241 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 18 - 220
Target Start/End: Original strand, 4360829 - 4361031
Alignment:
| Q |
18 |
ggatggaaaagctgaaaattctaaatcttagtcattctcattgtctgacgcacaccccagacttttcatacatgcctaatcttgagaagctggtactcaa |
117 |
Q |
| |
|
||||||| ||||||||||||| ||||||||||||||||| | |||||| || || || |||||||||||| ||||||||||||| ||||| ||||| || |
|
|
| T |
4360829 |
ggatggagcagctgaaaattctcaatcttagtcattctcaatatctgacacagacgcctgacttttcatacttgcctaatcttgaaaagctagtacttaa |
4360928 |
T |
|
| Q |
118 |
agattgtccaatgttgtctgaggtttctcctactattggagatctcactgaaatacttctaatagatttggaagattgtgttggccttcgtagccttcca |
217 |
Q |
| |
|
||||||||||| | |||||||| |||| | | ||||||| |||||| |||| ||| | ||| ||||| ||||||| || ||||| ||| ||||||| |
|
|
| T |
4360929 |
agattgtccaaggctgtctgagatttcccaaagtattggacatctcaagaaaattcttttgataaatttgaaagattgcattagcctttgtaaccttcca |
4361028 |
T |
|
| Q |
218 |
aga |
220 |
Q |
| |
|
||| |
|
|
| T |
4361029 |
aga |
4361031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 11 - 220
Target Start/End: Complemental strand, 4320955 - 4320746
Alignment:
| Q |
11 |
ttgcagaggatggaaaagctgaaaattctaaatcttagtcattctcattgtctgacgcacaccccagacttttcatacatgcctaatcttgagaagctgg |
110 |
Q |
| |
|
|||||||||||||| ||||||| |||||||||||||||||||||||| | |||| || ||||| |||||||||||| ||||||||||||| ||||| | |
|
|
| T |
4320955 |
ttgcagaggatggagcagctgaagattctaaatcttagtcattctcatcatttgacacagacccctgacttttcatacttgcctaatcttgaaaagctag |
4320856 |
T |
|
| Q |
111 |
tactcaaagattgtccaatgttgtctgaggtttctcctactattggagatctcactgaaatacttctaatagatttggaagattgtgttggccttcgtag |
210 |
Q |
| |
|
| ||| ||||||| |||| | ||||| ||||||| | || |||||| |||||| || | || | ||| ||||| |||||||| || ||||| |||| |
|
|
| T |
4320855 |
tgctcgaagattgcccaaggctgtctcaggtttcccatagcattggacatctcaaaaaagttgttttgataaatttgaaagattgtattagcctttgtag |
4320756 |
T |
|
| Q |
211 |
ccttccaaga |
220 |
Q |
| |
|
|||||||||| |
|
|
| T |
4320755 |
ccttccaaga |
4320746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 6 - 144
Target Start/End: Complemental strand, 4133764 - 4133626
Alignment:
| Q |
6 |
tgttcttgcagaggatggaaaagctgaaaattctaaatcttagtcattctcattgtctgacgcacaccccagacttttcatacatgcctaatcttgagaa |
105 |
Q |
| |
|
|||||||||||||| |||| || || ||| |||| ||||||||||||||||||||||| || |||||||| |||||| ||||||||||||| || || |
|
|
| T |
4133764 |
tgttcttgcagaggctggagaatctaaaatttctcaatcttagtcattctcattgtctagtacagaccccagatttttcacacatgcctaatctagaaaa |
4133665 |
T |
|
| Q |
106 |
gctggtactcaaagattgtccaatgttgtctgaggtttc |
144 |
Q |
| |
|
|| |||||||||||||||||| | ||||||||||||| |
|
|
| T |
4133664 |
actaatactcaaagattgtccaaggctgtctgaggtttc |
4133626 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 32 - 128
Target Start/End: Original strand, 6752726 - 6752822
Alignment:
| Q |
32 |
aaaattctaaatcttagtcattctcattgtctgacgcacaccccagacttttcatacatgcctaatcttgagaagctggtactcaaagattgtccaa |
128 |
Q |
| |
|
|||||||| ||||||||||||||||| | |||| | || |||||||||||||| |||||||||||||| ||||| ||||||||||| ||||||| |
|
|
| T |
6752726 |
aaaattcttaatcttagtcattctcaggatttgaccgaaactccagacttttcatatatgcctaatcttgaaaagcttgtactcaaagactgtccaa |
6752822 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 71 - 128
Target Start/End: Original strand, 6650872 - 6650929
Alignment:
| Q |
71 |
accccagacttttcatacatgcctaatcttgagaagctggtactcaaagattgtccaa |
128 |
Q |
| |
|
|||||||||||||||| ||||||||||||||| ||||| ||||||||||| ||||||| |
|
|
| T |
6650872 |
accccagacttttcattcatgcctaatcttgaaaagctagtactcaaagactgtccaa |
6650929 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 32 - 128
Target Start/End: Original strand, 6772870 - 6772966
Alignment:
| Q |
32 |
aaaattctaaatcttagtcattctcattgtctgacgcacaccccagacttttcatacatgcctaatcttgagaagctggtactcaaagattgtccaa |
128 |
Q |
| |
|
|||||||| |||||||||||||| ||| | |||| | |||||||||||||||||| |||| |||||||| ||||| |||||||| ||||||||| |
|
|
| T |
6772870 |
aaaattcttaatcttagtcattcccatgatttgaccgaaaccccagacttttcatacttgccgaatcttgaaaagctagtactcaagaattgtccaa |
6772966 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 32 - 137
Target Start/End: Original strand, 6837040 - 6837145
Alignment:
| Q |
32 |
aaaattctaaatcttagtcattctcattgtctgacgcacaccccagacttttcatacatgcctaatcttgagaagctggtactcaaagattgtccaatgt |
131 |
Q |
| |
|
|||||||| ||||||||||||||||| | |||| | || |||||||| ||||| ||||| |||||||| ||||| ||||||||||| ||||||| | |
|
|
| T |
6837040 |
aaaattcttaatcttagtcattctcaggatttgactgaaactccagacttctcatatatgccgaatcttgaaaagctagtactcaaagactgtccaagtt |
6837139 |
T |
|
| Q |
132 |
tgtctg |
137 |
Q |
| |
|
|||||| |
|
|
| T |
6837140 |
tgtctg |
6837145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 32 - 128
Target Start/End: Original strand, 6675469 - 6675565
Alignment:
| Q |
32 |
aaaattctaaatcttagtcattctcattgtctgacgcacaccccagacttttcatacatgcctaatcttgagaagctggtactcaaagattgtccaa |
128 |
Q |
| |
|
|||||||| ||||||||||||||||| | || | | |||||||||||||||||| |||| ||| |||| |||||||| |||||||| ||||||| |
|
|
| T |
6675469 |
aaaattcttaatcttagtcattctcaaaatttggctgaaaccccagacttttcatacttgcccaatattgaaaagctggtgctcaaagactgtccaa |
6675565 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 34 - 137
Target Start/End: Complemental strand, 6532545 - 6532442
Alignment:
| Q |
34 |
aattctaaatcttagtcattctcattgtctgacgcacaccccagacttttcatacatgcctaatcttgagaagctggtactcaaagattgtccaatgttg |
133 |
Q |
| |
|
|||||| |||||||||||||||| | |||| | |||||| |||||||||| |||||||||||||| ||| | ||||||||||| ||||||| ||| |
|
|
| T |
6532545 |
aattcttaatcttagtcattctctacatttgactgaaaccccaaacttttcatatatgcctaatcttgaaaagttagtactcaaagactgtccaagtttg |
6532446 |
T |
|
| Q |
134 |
tctg |
137 |
Q |
| |
|
|||| |
|
|
| T |
6532445 |
tctg |
6532442 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 71 - 128
Target Start/End: Complemental strand, 6545724 - 6545667
Alignment:
| Q |
71 |
accccagacttttcatacatgcctaatcttgagaagctggtactcaaagattgtccaa |
128 |
Q |
| |
|
||||||||||||||||| |||||||||||||| ||| | |||||||||| ||||||| |
|
|
| T |
6545724 |
accccagacttttcatatatgcctaatcttgaaaagatagtactcaaaggctgtccaa |
6545667 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 71 - 128
Target Start/End: Complemental strand, 6621783 - 6621726
Alignment:
| Q |
71 |
accccagacttttcatacatgcctaatcttgagaagctggtactcaaagattgtccaa |
128 |
Q |
| |
|
|||||||| |||||||||||||||||||| || ||||| || |||||||| ||||||| |
|
|
| T |
6621783 |
accccagatttttcatacatgcctaatctcgaaaagctagtgctcaaagactgtccaa |
6621726 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 71 - 128
Target Start/End: Original strand, 6815275 - 6815332
Alignment:
| Q |
71 |
accccagacttttcatacatgcctaatcttgagaagctggtactcaaagattgtccaa |
128 |
Q |
| |
|
|||||||||||| ||||| |||| |||||||| ||||| ||||||||| ||||||||| |
|
|
| T |
6815275 |
accccagactttacatacttgccaaatcttgaaaagctagtactcaaaaattgtccaa |
6815332 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 32 - 128
Target Start/End: Complemental strand, 6498841 - 6498745
Alignment:
| Q |
32 |
aaaattctaaatcttagtcattctcattgtctgacgcacaccccagacttttcatacatgcctaatcttgagaagctggtactcaaagattgtccaa |
128 |
Q |
| |
|
|||||||| ||||||||||||||||| | ||| | |||||||||||| | ||| |||||||| |||| ||||| ||||||||||| ||||||| |
|
|
| T |
6498841 |
aaaattcttaatcttagtcattctcagaatttgattgaaaccccagactttacgtacttgcctaatattgaaaagctagtactcaaagactgtccaa |
6498745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 74 - 128
Target Start/End: Original strand, 6715575 - 6715629
Alignment:
| Q |
74 |
ccagacttttcatacatgcctaatcttgagaagctggtactcaaagattgtccaa |
128 |
Q |
| |
|
|||||||||||||||||||| |||||||| ||||| ||||| |||| ||||||| |
|
|
| T |
6715575 |
ccagacttttcatacatgccaaatcttgaaaagcttatactcgaagactgtccaa |
6715629 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 79; Significance: 5e-37; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 6 - 220
Target Start/End: Complemental strand, 47987193 - 47986979
Alignment:
| Q |
6 |
tgttcttgcagaggatggaaaagctgaaaattctaaatcttagtcattctcattgtctgacgcacaccccagacttttcatacatgcctaatcttgagaa |
105 |
Q |
| |
|
|||||||||||| |||||||||||| |||||||| ||||||||||||||||||| ||| || | | || ||||||||| ||||||||||||| || || |
|
|
| T |
47987193 |
tgttcttgcagaagatggaaaagctaaaaattctcaatcttagtcattctcattatctcacacgaagccttgacttttcaaacatgcctaatctcgaaaa |
47987094 |
T |
|
| Q |
106 |
gctggtactcaaagattgtccaatgttgtctgaggtttctcctactattggagatctcactgaaatacttctaatagatttggaagattgtgttggcctt |
205 |
Q |
| |
|
||| |||||||||||||| |||||||| |||||| ||||||||| |||||| ||||| |||| ||||| ||| |||||||||| ||| || |||| |
|
|
| T |
47987093 |
gctagtactcaaagattgcccaatgttatctgagatttctcctagcattggacatctcgacaaaattcttctgataaatttggaagactgtattagccta |
47986994 |
T |
|
| Q |
206 |
cgtagccttccaaga |
220 |
Q |
| |
|
||||||| |||||| |
|
|
| T |
47986993 |
tgtagcctcccaaga |
47986979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 6 - 220
Target Start/End: Complemental strand, 47996480 - 47996266
Alignment:
| Q |
6 |
tgttcttgcagaggatggaaaagctgaaaattctaaatcttagtcattctcattgtctgacgcacaccccagacttttcatacatgcctaatcttgagaa |
105 |
Q |
| |
|
|||||||||||| |||||||||||| |||||||| ||||||||||||||||||| ||| || | | || ||||||||| ||||||||||||| || || |
|
|
| T |
47996480 |
tgttcttgcagaagatggaaaagctaaaaattctcaatcttagtcattctcattatctcacacgaagccttgacttttcaaacatgcctaatctcgaaaa |
47996381 |
T |
|
| Q |
106 |
gctggtactcaaagattgtccaatgttgtctgaggtttctcctactattggagatctcactgaaatacttctaatagatttggaagattgtgttggcctt |
205 |
Q |
| |
|
||| |||||||||||||| |||||||| |||||| ||||||||| |||||| ||||| |||| ||||| ||| |||||||||| ||| || |||| |
|
|
| T |
47996380 |
gctagtactcaaagattgcccaatgttatctgagatttctcctagcattggacatctcgacaaaattcttctgataaatttggaagactgtattagccta |
47996281 |
T |
|
| Q |
206 |
cgtagccttccaaga |
220 |
Q |
| |
|
||||||| |||||| |
|
|
| T |
47996280 |
tgtagcctcccaaga |
47996266 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 6 - 220
Target Start/End: Complemental strand, 48005767 - 48005553
Alignment:
| Q |
6 |
tgttcttgcagaggatggaaaagctgaaaattctaaatcttagtcattctcattgtctgacgcacaccccagacttttcatacatgcctaatcttgagaa |
105 |
Q |
| |
|
|||||||||||| |||||||||||| |||||||| ||||||||||||||||||| ||| || | | || ||||||||| ||||||||||||| || || |
|
|
| T |
48005767 |
tgttcttgcagaagatggaaaagctaaaaattctcaatcttagtcattctcattatctcacacgaagccttgacttttcaaacatgcctaatctcgaaaa |
48005668 |
T |
|
| Q |
106 |
gctggtactcaaagattgtccaatgttgtctgaggtttctcctactattggagatctcactgaaatacttctaatagatttggaagattgtgttggcctt |
205 |
Q |
| |
|
||| |||||||||||||| |||||||| |||||| ||||||||| |||||| ||||| |||| ||||| ||| |||||||||| ||| || |||| |
|
|
| T |
48005667 |
gctagtactcaaagattgcccaatgttatctgagatttctcctagcattggacatctcgacaaaattcttctgataaatttggaagactgtattagccta |
48005568 |
T |
|
| Q |
206 |
cgtagccttccaaga |
220 |
Q |
| |
|
||||||| |||||| |
|
|
| T |
48005567 |
tgtagcctcccaaga |
48005553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 6 - 220
Target Start/End: Complemental strand, 48015052 - 48014838
Alignment:
| Q |
6 |
tgttcttgcagaggatggaaaagctgaaaattctaaatcttagtcattctcattgtctgacgcacaccccagacttttcatacatgcctaatcttgagaa |
105 |
Q |
| |
|
|||||||||||| |||||||||||| |||||||| ||||||||||||||||||| ||| || | | || ||||||||| ||||||||||||| || || |
|
|
| T |
48015052 |
tgttcttgcagaagatggaaaagctaaaaattctcaatcttagtcattctcattatctcacacgaagccttgacttttcaaacatgcctaatctcgaaaa |
48014953 |
T |
|
| Q |
106 |
gctggtactcaaagattgtccaatgttgtctgaggtttctcctactattggagatctcactgaaatacttctaatagatttggaagattgtgttggcctt |
205 |
Q |
| |
|
||| |||||||||||||| |||||||| |||||| ||||||||| |||||| ||||| |||| ||||| ||| |||||||||| ||| || |||| |
|
|
| T |
48014952 |
gctagtactcaaagattgcccaatgttatctgagatttctcctagcattggacatctcgacaaaattcttctgataaatttggaagactgtattagccta |
48014853 |
T |
|
| Q |
206 |
cgtagccttccaaga |
220 |
Q |
| |
|
||||||| |||||| |
|
|
| T |
48014852 |
tgtagcctcccaaga |
48014838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 67; Significance: 7e-30; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 6 - 220
Target Start/End: Original strand, 8877349 - 8877563
Alignment:
| Q |
6 |
tgttcttgcagaggatggaaaagctgaaaattctaaatcttagtcattctcattgtctgacgcacaccccagacttttcatacatgcctaatcttgagaa |
105 |
Q |
| |
|
||||||||||||||||||| ||||| |||||||| |||||||| || |||||| |||||| || || |||||||||| | || ||||||||||||| || |
|
|
| T |
8877349 |
tgttcttgcagaggatggagaagctaaaaattctcaatcttagccactctcatcatctgacacaaactccagactttttaaacttgcctaatcttgaaaa |
8877448 |
T |
|
| Q |
106 |
gctggtactcaaagattgtccaatgttgtctgaggtttctcctactattggagatctcactgaaatacttctaatagatttggaagattgtgttggcctt |
205 |
Q |
| |
|
||| ||||||||||||||||| | |||| ||| |||| | |||||| ||| ||| | | || | ||| | ||| |||||||||||||| || ||||| |
|
|
| T |
8877449 |
gctagtactcaaagattgtccgaggttgatagagatttcgcatactataggacttctgaataaagttcttttgataaatttggaagattgtattagcctt |
8877548 |
T |
|
| Q |
206 |
cgtagccttccaaga |
220 |
Q |
| |
|
|| |||||||||||| |
|
|
| T |
8877549 |
cggagccttccaaga |
8877563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0813 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: scaffold0813
Description:
Target: scaffold0813; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 71 - 128
Target Start/End: Complemental strand, 5102 - 5045
Alignment:
| Q |
71 |
accccagacttttcatacatgcctaatcttgagaagctggtactcaaagattgtccaa |
128 |
Q |
| |
|
|||||||||||||||| ||||||||||||||| ||||| ||||||||||| ||||||| |
|
|
| T |
5102 |
accccagacttttcattcatgcctaatcttgaaaagctagtactcaaagactgtccaa |
5045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0286 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: scaffold0286
Description:
Target: scaffold0286; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 71 - 128
Target Start/End: Original strand, 6464 - 6521
Alignment:
| Q |
71 |
accccagacttttcatacatgcctaatcttgagaagctggtactcaaagattgtccaa |
128 |
Q |
| |
|
|||||||||||||||| ||||||||||||||| ||||| ||||||||||| ||||||| |
|
|
| T |
6464 |
accccagacttttcattcatgcctaatcttgaaaagctagtactcaaagactgtccaa |
6521 |
T |
|
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Target: scaffold0373 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0373
Description:
Target: scaffold0373; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 32 - 137
Target Start/End: Original strand, 9456 - 9561
Alignment:
| Q |
32 |
aaaattctaaatcttagtcattctcattgtctgacgcacaccccagacttttcatacatgcctaatcttgagaagctggtactcaaagattgtccaatgt |
131 |
Q |
| |
|
|||||||| ||||||||||||||||| | |||| | || |||||||| ||||| ||||| |||||||| ||||| ||||||||||| ||||||| | |
|
|
| T |
9456 |
aaaattcttaatcttagtcattctcaggatttgactgaaactccagacttctcatatatgccgaatcttgaaaagctagtactcaaagactgtccaagtt |
9555 |
T |
|
| Q |
132 |
tgtctg |
137 |
Q |
| |
|
|||||| |
|
|
| T |
9556 |
tgtctg |
9561 |
T |
|
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Target: scaffold0552 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0552
Description:
Target: scaffold0552; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 71 - 128
Target Start/End: Complemental strand, 8561 - 8504
Alignment:
| Q |
71 |
accccagacttttcatacatgcctaatcttgagaagctggtactcaaagattgtccaa |
128 |
Q |
| |
|
|||||||||||| ||||| |||| |||||||| ||||| ||||||||| ||||||||| |
|
|
| T |
8561 |
accccagactttacatacttgccaaatcttgaaaagctagtactcaaaaattgtccaa |
8504 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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