View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17644_low_14 (Length: 227)
Name: NF17644_low_14
Description: NF17644
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17644_low_14 |
 | |
|
| [»] chr6 (5 HSPs) |
| |
|
Alignment Details
Target: chr6 (Bit Score: 211; Significance: 1e-116; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 5102990 - 5103216
Alignment:
| Q |
1 |
aaaaaataaatggaaacaattacaatgatatgatgcgctgttttatcgaataccaatatcagagcaaaattttgaaccaaggttaaatttctgtacacag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5102990 |
aaaaaataaatggaaacaattacaatgatatgatgcgctgttttatcgaataccaatatcagagcaaaattttgaaccaaggttaaatttctgtacacag |
5103089 |
T |
|
| Q |
101 |
tgttccagaaattactaaaagccatgtttgaccattttaccgagagatcaataatttgtaatgatagaatgttttaaatgtaaatcaaaagcttctttaa |
200 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
5103090 |
tgttgcagaaattactaaaagccatgtttgaccattttaccgagagatcaataatttgcaatgatagaatgttttaaatgtaaatctaaagcttctttaa |
5103189 |
T |
|
| Q |
201 |
cgaaatagtcaatgttgccaacatctt |
227 |
Q |
| |
|
|||||||||||||||||||| |||||| |
|
|
| T |
5103190 |
cgaaatagtcaatgttgccaccatctt |
5103216 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 111 - 185
Target Start/End: Complemental strand, 5096261 - 5096187
Alignment:
| Q |
111 |
attactaaaagccatgtttgaccattttaccgagagatcaataatttgtaatgatagaatgttttaaatgtaaat |
185 |
Q |
| |
|
|||| ||||| |||||||||| |||||| |||||| ||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
5096261 |
attattaaaaaccatgtttgagcattttgccgagacatcaataatttataatgatagaatgttttaaatgtaaat |
5096187 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 106 - 177
Target Start/End: Original strand, 5067201 - 5067272
Alignment:
| Q |
106 |
cagaaattactaaaagccatgtttgaccattttaccgagagatcaataatttgtaatgatagaatgttttaa |
177 |
Q |
| |
|
||||||||| ||||||||||| ||| ||| ||| |||||||||||||||||| |||||||||||||||||| |
|
|
| T |
5067201 |
cagaaattataaaaagccatgtctgagcatattaacgagagatcaataatttgaaatgatagaatgttttaa |
5067272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 52 - 148
Target Start/End: Complemental strand, 5370186 - 5370091
Alignment:
| Q |
52 |
accaatatcagagcaaaattttgaaccaaggttaaatttctgtacacagtgttccagaaattactaaaagccatgtttgaccattttaccgagagat |
148 |
Q |
| |
|
|||||||| || | ||||||||||| ||||| |||||||||||| | | |||| ||||||||| ||||||||||| ||| |||||| ||||||||| |
|
|
| T |
5370186 |
accaatattagtgtaaaattttgaaacaaggctaaatttctgtatataatgttgcagaaattataaaaagccatgtctgagcatttt-ccgagagat |
5370091 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 117 - 177
Target Start/End: Complemental strand, 5349985 - 5349925
Alignment:
| Q |
117 |
aaaagccatgtttgaccattttaccgagagatcaataatttgtaatgatagaatgttttaa |
177 |
Q |
| |
|
||||||||||| ||| ||| ||| ||||||||||||||||| ||||||| | |||||||| |
|
|
| T |
5349985 |
aaaagccatgtctgagcatattaacgagagatcaataatttcaaatgatatactgttttaa |
5349925 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University