View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17644_low_2 (Length: 517)
Name: NF17644_low_2
Description: NF17644
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17644_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 278; Significance: 1e-155; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 225 - 502
Target Start/End: Complemental strand, 10224955 - 10224678
Alignment:
| Q |
225 |
tttaacatgtgtatgtacaacctacttagttagttcatgcttgaaaagttagaactgccacaagcaattcttagtttttcaagcagtggttcatgtggct |
324 |
Q |
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| T |
10224955 |
tttaacatgtgtatgtacaacctacttagttagttcatgcttgaaaagttagaactgccacaagcaattcttagtttttcaagcagtggttcatgtggct |
10224856 |
T |
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| Q |
325 |
gcactccagccgccttcatctgatacacaaacttaacagcttcaatatacaaaccattttgtatgtaacccataagcatcgcattcaaactatcgacatt |
424 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10224855 |
gcactccagccgccttcatctgatacacaaacttaacagcttcaatatacaaaccattttgtatgtaacccataagcatcgcattcaaactatcgacatt |
10224756 |
T |
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| Q |
425 |
tctttcatttcgtgtcatttcaaataccagttctgcatctcttagtaatccacttcttccatacatggctatcaaact |
502 |
Q |
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| T |
10224755 |
tctttcatttcgtgtcatttcaaataccagttctgcatctcttagtaatccacttcttccatacatggctatcaaact |
10224678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 10225203 - 10224974
Alignment:
| Q |
1 |
tttaattggaagataaaacatactgtttttgacttaatatcctttaccatcaatgcttttctcaagccttccacnnnnnnnnnn-cttacaatcgacttc |
99 |
Q |
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| T |
10225203 |
tttacttggaagataaaacatactgtttttgaattaatatcctttaccatcaatgattttatcatgccatcaacattttttttttcctaaaatcagattc |
10225104 |
T |
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| Q |
100 |
acattcatttgcacctttactctatataatgaaatttaaactagtgttcttcataatacttttatatgcaattaacgactatcacaagtttgaaactgca |
199 |
Q |
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| T |
10225103 |
acattcatctgcacgtttactctatataatggaatttaaactagagttcttcataatacttttatatgcaattaaagactatcacaagtttgaaactgca |
10225004 |
T |
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| Q |
200 |
aagttatgtgtaaatttcagtatattttaa |
229 |
Q |
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| T |
10225003 |
aagttatgtgtaaatttcagtatattttaa |
10224974 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 225 - 322
Target Start/End: Complemental strand, 10243693 - 10243595
Alignment:
| Q |
225 |
tttaacatgtgtatgtacaacctacttagttagttcatgcttgaaaagttagaactgccac-aagcaattcttagtttttcaagcagtggttcatgtgg |
322 |
Q |
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| T |
10243693 |
tttaacatgtgtatgtacaacctacttagttagttcatgattgaaaaggtagaactgccacaaagcaattcttaatttttcaagtagtgattcatgtgg |
10243595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 97 - 215
Target Start/End: Complemental strand, 10243848 - 10243730
Alignment:
| Q |
97 |
ttcacattcatttgcacctttactctatataatgaaatttaaactagtgttcttcataatacttttatatgcaattaacgactatcacaagtttgaaact |
196 |
Q |
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||||||||||| ||||| |||||||| || |||| ||||||||| || |||||||||||||||||||||| ||||||| ||||||||||||||||||||| |
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| T |
10243848 |
ttcacattcatctgcacgtttactctctagaatggaatttaaacaagagttcttcataatacttttatattcaattaaagactatcacaagtttgaaact |
10243749 |
T |
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| Q |
197 |
gcaaagttatgtgtaaatt |
215 |
Q |
| |
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|||| |||||||||||| |
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| T |
10243748 |
acaaaagtatgtgtaaatt |
10243730 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 225 - 321
Target Start/End: Complemental strand, 10233213 - 10233113
Alignment:
| Q |
225 |
tttaacatgtgtatgtacaacctac----ttagttagttcatgcttgaaaagttagaactgccacaagcaattcttagtttttcaagcagtggttcatgt |
320 |
Q |
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|||||||||||||| | |||||||| |||||||||||||| |||||||| ||||||| |||||||||||||||| ||||||||| |||| ||||||| |
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| T |
10233213 |
tttaacatgtgtattttcaacctacgtacttagttagttcatggttgaaaaggtagaactaccacaagcaattcttaatttttcaagtagtgattcatgt |
10233114 |
T |
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| Q |
321 |
g |
321 |
Q |
| |
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| T |
10233113 |
g |
10233113 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 390 - 471
Target Start/End: Complemental strand, 10243538 - 10243457
Alignment:
| Q |
390 |
taacccataagcatcgcattcaaactatcgacatttctttcatttcgtgtcatttcaaataccagttctgcatctcttagta |
471 |
Q |
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|||||||||| ||| ||||| ||||||| |||||||||||||||| ||| ||||||| |||| || |||||||||||||| |
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| T |
10243538 |
taacccataaacatgccattccaactatcaacatttctttcatttcaagtcgtttcaaacaccatttttgcatctcttagta |
10243457 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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