View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17644_low_4 (Length: 478)
Name: NF17644_low_4
Description: NF17644
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17644_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 263; Significance: 1e-146; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 1 - 275
Target Start/End: Complemental strand, 29413556 - 29413282
Alignment:
| Q |
1 |
ttattattactatcatcattgttagaagaatcaagtgatgaaactgaatttccttggtcagcaacaaaatcagttgtggtaactgaatatctacaaacag |
100 |
Q |
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| T |
29413556 |
ttattattactatcatcattgttagaagaatcaagtgatgaaactgaatttccttggtctgcaacaaaatcagttgtggtaactgaatatctacaaacag |
29413457 |
T |
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| Q |
101 |
acaaagaaacacaatgccatctttctttccctatacaattccttctagaactagaaagagaaactcttctaacaacagaatgtgacattctagaagaact |
200 |
Q |
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| T |
29413456 |
acaaagaaacacaatgccatctttttttccctatacaattccttctagaactagaaagagaaactcttctaacaacagaatgtgacattctagaagaact |
29413357 |
T |
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| Q |
201 |
acctaaacttattggtgaagcaagagaactcattgatgttccttgcacgttaccaactaatataagcatattaag |
275 |
Q |
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| T |
29413356 |
accaaaacttattggtgaagcaagagaactcattgatgttccttgcacgttaccaactaatataagcatattaag |
29413282 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 311 - 460
Target Start/End: Complemental strand, 29413245 - 29413096
Alignment:
| Q |
311 |
tgtctagttaaaccttaacatacccaaagttgagaattgaagtgacccagaaaggaaattgtgatgaaaatgaagaattaatggtacctttggattaaag |
410 |
Q |
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| T |
29413245 |
tgtctagttaaaccttaacatacccaaagttgagaattgaagtgacccagaaaggaaattgtgatgaaaatgaagaattaatggtacctttggattaaag |
29413146 |
T |
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| Q |
411 |
acaggaactttaagtttgaaattgaagtagaacatgcatatgggtattga |
460 |
Q |
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| T |
29413145 |
acaggaactttaagtttgaaattgaagtagaacatgcatatgggtattga |
29413096 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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