View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17644_low_5 (Length: 400)
Name: NF17644_low_5
Description: NF17644
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17644_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 352; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 10 - 383
Target Start/End: Original strand, 33309388 - 33309758
Alignment:
| Q |
10 |
gaagaatatacttacaaaaatgttgggaacaatacgaggtacattgcataattcagagacaaagaggaaaatacgattgagtaataagataagaacaaat |
109 |
Q |
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| T |
33309388 |
gaagaatatacttacaaaaatgttgggaacaatacgaggtacattgcataattcagagacaaagaggaaaatacgattgagtaataagataagaacaaat |
33309487 |
T |
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| Q |
110 |
tgaagaacaaatacaggtagtgtttcttctaaggaattttcattccaaagcaatgaaccgtatgataatgtcttattgaaacacacaagcgttgttttgt |
209 |
Q |
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| T |
33309488 |
tgaagaacaaatacaggtagtgtttcttctaaggaattttcattccaaagcaatgaaccgtatgataatgtcttattgaaacacacaagcgttgttttgt |
33309587 |
T |
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| Q |
210 |
cggggtttttgataatggaatatgtaacgtttgaggaattcatcaatttttattcaatgatgatttgcattagccaacacctttacaatctttgaaatct |
309 |
Q |
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| T |
33309588 |
cggggtttttaataatggaatatgtaacgtttgaggaattcatcaatttttattcaatgatgatttgcattagccaacacttttacaatctttgaaa--- |
33309684 |
T |
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| Q |
310 |
tctgcatgcaaataggattgatgagatattgcacaattgtgaagcaaaatttgaaatcaaatccatgaaggggg |
383 |
Q |
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| T |
33309685 |
tctgcatgcaaataggattgatgagatattgcacaattgtgaagcaaaatttgaaatcaaatccatgaaggggg |
33309758 |
T |
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