View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17644_low_6 (Length: 385)

Name: NF17644_low_6
Description: NF17644
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17644_low_6
NF17644_low_6
[»] chr3 (14 HSPs)
chr3 (2-369)||(5299183-5299550)
chr3 (13-370)||(5268519-5268876)
chr3 (14-370)||(5250633-5250989)
chr3 (13-365)||(4388151-4388503)
chr3 (3-78)||(6519663-6519738)
chr3 (6-232)||(8455110-8455336)
chr3 (14-231)||(8590193-8590410)
chr3 (6-230)||(6479331-6479555)
chr3 (6-78)||(6947725-6947797)
chr3 (14-78)||(6553939-6554003)
chr3 (2-75)||(6448286-6448359)
chr3 (14-78)||(6736454-6736518)
chr3 (13-193)||(8568334-8568514)
chr3 (99-163)||(6259731-6259795)
[»] scaffold0425 (1 HSPs)
scaffold0425 (14-78)||(6978-7042)
[»] chr7 (1 HSPs)
chr7 (13-77)||(6572800-6572864)


Alignment Details
Target: chr3 (Bit Score: 356; Significance: 0; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 2 - 369
Target Start/End: Original strand, 5299183 - 5299550
Alignment:
Q  2 atcatgttgttattgtacacaagttgagcaagggtggtttttcccattccacctagacccaccatgctgattattggtacacgatcgccagcatctatgt 101  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||    
T  5299183 atcatgttgttattgtacacaagttgagcaagggtggtttttcccattccacctagacccactatgctgattattggtacacggtcgccagcatctatgt 5299282  T
Q  102 cggaaagtaaaaatttggttacttcctctttgtcaccatctctgccatatatgctcgattcatccaccaaagatgtacttggcaatctttttaaagcttt 201  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5299283 cggaaagtaaaaatttggttacttcctctttgtcaccatctctgccatatatgctcgattcatccaccaaagatgtacttggcaatctttttaaagcttt 5299382  T
Q  202 ccaaccgacttcaccttcattactagcacaaatttcttgttttaaccctaacatatccttttgctttgctagaaattctaacttctctagcaattctttg 301  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5299383 ccaaccgacttcaccttcattactagcacaaatttcttgttttaaccctaacatatccttttgctttgctagaaattctaacttctctagcaattctttg 5299482  T
Q  302 atcctagactcaaagggatcagtaaacgatgaaaagaagtcgaataccttgctagtagaaggttgaga 369  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  5299483 atcctagactcaaagggatcagtacacgatgaaaagaagtcgaataccttgctagtagaaggttgaga 5299550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 13 - 370
Target Start/End: Original strand, 5268519 - 5268876
Alignment:
Q  13 attgtacacaagttgagcaagggtggtttttcccattccacctagacccaccatgctgattattggtacacgatcgccagcatctatgtcggaaagtaaa 112  Q
    ||||||||| ||||||||||||||||| || ||||||||||| |||||||| |||||||||||||||||| | | |||    |||||||| || ||||||    
T  5268519 attgtacacgagttgagcaagggtggtcttacccattccaccgagacccactatgctgattattggtacatggttgcccttgtctatgtcagacagtaaa 5268618  T
Q  113 aatttggttacttcctctttgtcaccatctctgccatatatgctcgattcatccaccaaagatgtacttggcaatctttttaaagctttccaaccgactt 212  Q
    || ||| |||  ||||| |||||||||||||| ||||||||||| ||||||||||||||||||||| |||||||||| | ||| | ||||||||  |||     
T  5268619 aaattgattaactcctccttgtcaccatctctaccatatatgctggattcatccaccaaagatgtagttggcaatctatctaagggtttccaactaactc 5268718  T
Q  213 caccttcattactagcacaaatttcttgttttaaccctaacatatccttttgctttgctagaaattctaacttctctagcaattctttgatcctagactc 312  Q
    |||||||| |||||||||||   ||||||||||| || | ||||| |||||| ||||| |||||||||| ||||||||||||||||||||||||||||||    
T  5268719 caccttcactactagcacaagcgtcttgttttaatccaagcatatgcttttgttttgcaagaaattctagcttctctagcaattctttgatcctagactc 5268818  T
Q  313 aaagggatcagtaaacgatgaaaagaagtcgaataccttgctagtagaaggttgagat 370  Q
    ||| |||| ||| || || |||| ||||||||||||||||||||||||||||||||||    
T  5268819 aaatggattagtgaaagacgaaatgaagtcgaataccttgctagtagaaggttgagat 5268876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 14 - 370
Target Start/End: Original strand, 5250633 - 5250989
Alignment:
Q  14 ttgtacacaagttgagcaagggtggtttttcccattccacctagacccaccatgctgattattggtacacgatcgccagcatctatgtcggaaagtaaaa 113  Q
    |||||| |||| |||||||| ||||| || ||||||||||| |||||||| |||||||||||||||||| ||| ||||   | |||||| || |||||||    
T  5250633 ttgtacgcaagctgagcaagagtggtcttacccattccaccgagacccactatgctgattattggtacatgattgccactgtttatgtcagacagtaaaa 5250732  T
Q  114 atttggttacttcctctttgtcaccatctctgccatatatgctcgattcatccaccaaagatgtacttggcaatctttttaaagctttccaaccgacttc 213  Q
    | |   |||  ||||| |||||||||||||| |||||||||||||||||||||||||||| |||| |||| ||||| | ||| | ||||||||  ||  |    
T  5250733 aatcaattaactcctccttgtcaccatctctaccatatatgctcgattcatccaccaaagctgtagttggaaatctatctaagggtttccaactaacgcc 5250832  T
Q  214 accttcattactagcacaaatttcttgttttaaccctaacatatccttttgctttgctagaaattctaacttctctagcaattctttgatcctagactca 313  Q
    ||||||| |||||||| ||   || ||||| || || | |||||||||||||||||| |||||||||| |||||||||||||||||| |||||||| |||    
T  5250833 accttcactactagcaaaagcctcatgtttcaatccgagcatatccttttgctttgcaagaaattctagcttctctagcaattctttaatcctagattca 5250932  T
Q  314 aagggatcagtaaacgatgaaaagaagtcgaataccttgctagtagaaggttgagat 370  Q
    || |||| ||| || ||||||||||||||||||||||||||||||||||||||||||    
T  5250933 aatggattagtgaaagatgaaaagaagtcgaataccttgctagtagaaggttgagat 5250989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 13 - 365
Target Start/End: Complemental strand, 4388503 - 4388151
Alignment:
Q  13 attgtacacaagttgagcaagggtggtttttcccattccacctagacccaccatgctgattattggtacacgatcgccagcatctatgtcggaaagtaaa 112  Q
    |||||||||||| |||||||| ||||| || ||||||||||| |||||||| |||||||||||||||||  | | |||    |||||||| || ||||||    
T  4388503 attgtacacaagctgagcaagagtggtcttacccattccaccgagacccactatgctgattattggtacttggttgccgctgtctatgtcagacagtaaa 4388404  T
Q  113 aatttggttacttcctctttgtcaccatctctgccatatatgctcgattcatccaccaaagatgtacttggcaatctttttaaagctttccaaccgactt 212  Q
    || |||  ||  |||||||||||||| | ||| ||||||||||||||| ||||||||||||||||| |||| |||||| | || | |||||||| || |     
T  4388403 aagttgactaactcctctttgtcaccgtttctaccatatatgctcgatccatccaccaaagatgtagttggaaatcttatcaagggtttccaactgagtc 4388304  T
Q  213 caccttcattactagcacaaatttcttgttttaaccctaacatatccttttgctttgctagaaattctaacttctctagcaattctttgatcctagactc 312  Q
    |||||||| ||||||||||  | |||||||| |  || | ||||||||||||||| || |||||||||||||||||||||||||||||||||||||| ||    
T  4388303 caccttcactactagcacaggtgtcttgtttcagtccgagcatatccttttgcttcgcaagaaattctaacttctctagcaattctttgatcctagattc 4388204  T
Q  313 aaagggatcagtaaacgatgaaaagaagtcgaataccttgctagtagaaggtt 365  Q
    ||| |||| | | || ||||||||||||| |||||||||||||||||||||||    
T  4388203 aaatggattaatgaaagatgaaaagaagttgaataccttgctagtagaaggtt 4388151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 3 - 78
Target Start/End: Complemental strand, 6519738 - 6519663
Alignment:
Q  3 tcatgttgttattgtacacaagttgagcaagggtggtttttcccattccacctagacccaccatgctgattattgg 78  Q
    ||||||||| |||||| ||| ||||||||||||||||||| |||||||| |||| |||||| ||||||||||||||    
T  6519738 tcatgttgtcattgtagacatgttgagcaagggtggttttacccattcctcctaaacccactatgctgattattgg 6519663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 6 - 232
Target Start/End: Original strand, 8455110 - 8455336
Alignment:
Q  6 tgttgttattgtacacaagttgagcaagggtggtttttcccattccacctagacccaccatgctgattattggtacacgatcgccagcatctatgtcgga 105  Q
    |||||| |||||||||||| | ||||||||||||||| ||||| || |||| ||| || |||||||||||||| ||  | | ||||  |||  || | |     
T  8455110 tgttgtcattgtacacaagcttagcaagggtggttttacccatccctcctaaaccgactatgctgattattggaacctggttgccactatcattgcctgc 8455209  T
Q  106 aagtaaaaatttggttacttcctctttgtcaccatctctgccatatatgctcgattcatccaccaaagatgtacttggcaatctttttaaagctttccaa 205  Q
    ||||||||| ||| ||| ||  || || ||| ||||||  |||||||||||||| |||||||| | || ||||  || ||| |||||| ||| |||||||    
T  8455210 aagtaaaaacttgattaatttttccttatcaacatctcgaccatatatgctcgactcatccacgagagctgtagatgacaacctttttgaaggtttccaa 8455309  T
Q  206 ccgacttcaccttcattactagcacaa 232  Q
    | ||||   |||||||| |||||||||    
T  8455310 ctgactaagccttcattcctagcacaa 8455336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 14 - 231
Target Start/End: Original strand, 8590193 - 8590410
Alignment:
Q  14 ttgtacacaagttgagcaagggtggtttttcccattccacctagacccaccatgctgattattggtacacgatcgccagcatctatgtcggaaagtaaaa 113  Q
    ||||||||||| | ||||||||||||||| ||||| || |||| ||| || |||||||||||||| || || | ||||  |||  || | | ||||||||    
T  8590193 ttgtacacaagcttagcaagggtggttttccccatccctcctaaaccgactatgctgattattggaacgcggttgccactatcattgcctgcaagtaaaa 8590292  T
Q  114 atttggttacttcctctttgtcaccatctctgccatatatgctcgattcatccaccaaagatgtacttggcaatctttttaaagctttccaaccgacttc 213  Q
    | ||| ||| ||  |  || ||| ||||||| |||||||||||||| |||||||| | || ||||  || ||| |||||| ||| |||||||| ||||      
T  8590293 acttgattagttttttcttatcaacatctctaccatatatgctcgactcatccacaagagctgtagatgacaacctttttgaaggtttccaactgactaa 8590392  T
Q  214 accttcattactagcaca 231  Q
     ||||| |||||||||||    
T  8590393 gccttcgttactagcaca 8590410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 6 - 230
Target Start/End: Complemental strand, 6479555 - 6479331
Alignment:
Q  6 tgttgttattgtacacaagttgagcaagggtggtttttcccattccacctagacccaccatgctgattattggtacacgatcgccagcatctatgtcgga 105  Q
    ||||||| ||||||||||| | ||||||||||||||| ||||| || |||| ||| || ||||||||||| || ||  |    |||   ||  || | |     
T  6479555 tgttgttgttgtacacaagcttagcaagggtggttttccccatccctcctaaaccaactatgctgattatcggaacctgggttccactgtcattgcctgc 6479456  T
Q  106 aagtaaaaatttggttacttcctctttgtcaccatctctgccatatatgctcgattcatccaccaaagatgtacttggcaatctttttaaagctttccaa 205  Q
    ||||||||||||| | | ||| || |||||| ||||||||||||||||||| || |||||||| | ||  |||  || |||||||||| ||| |||||||    
T  6479455 aagtaaaaatttgataagttcttccttgtcaacatctctgccatatatgctggactcatccacgagagccgtagatgacaatctttttgaaggtttccaa 6479356  T
Q  206 ccgacttcaccttcattactagcac 230  Q
    | ||||   ||||||||||||||||    
T  6479355 ctgactaagccttcattactagcac 6479331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 6 - 78
Target Start/End: Original strand, 6947725 - 6947797
Alignment:
Q  6 tgttgttattgtacacaagttgagcaagggtggtttttcccattccacctagacccaccatgctgattattgg 78  Q
    |||||| |||||||||||| | ||||||||||||||| ||||| || |||| |||||| ||||||||||||||    
T  6947725 tgttgtcattgtacacaagcttagcaagggtggttttccccatccctcctaaacccactatgctgattattgg 6947797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 14 - 78
Target Start/End: Complemental strand, 6554003 - 6553939
Alignment:
Q  14 ttgtacacaagttgagcaagggtggtttttcccattccacctagacccaccatgctgattattgg 78  Q
    ||||||||||| | ||||||||||||||| ||||| || |||| |||||| ||||||||||||||    
T  6554003 ttgtacacaagcttagcaagggtggttttccccatccctcctaaacccactatgctgattattgg 6553939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 2 - 75
Target Start/End: Complemental strand, 6448359 - 6448286
Alignment:
Q  2 atcatgttgttattgtacacaagttgagcaagggtggtttttcccattccacctagacccaccatgctgattat 75  Q
    |||||||||| |||||||||||| | |||||  ||||| || ||||| ||||| |||||||| |||||||||||    
T  6448359 atcatgttgtgattgtacacaagcttagcaaaagtggtcttacccatcccacccagacccactatgctgattat 6448286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 78
Target Start/End: Original strand, 6736454 - 6736518
Alignment:
Q  14 ttgtacacaagttgagcaagggtggtttttcccattccacctagacccaccatgctgattattgg 78  Q
    ||||||||||| | ||||||||||||||| ||||| || |||| |||||| ||||| ||||||||    
T  6736454 ttgtacacaagcttagcaagggtggttttccccatccctcctaaacccactatgctaattattgg 6736518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 193
Target Start/End: Complemental strand, 8568514 - 8568334
Alignment:
Q  13 attgtacacaagttgagcaagggtggtttttcccattccacctagacccaccatgctgattattggtacacgatcgccagcatctatgtcggaaagtaaa 112  Q
    |||||| |||||| ||||||||||||| || ||||| |||||||||||||| || || ||||     ||| | | |||| ||||  ||||  |||| |||    
T  8568514 attgtagacaagtcgagcaagggtggtcttacccatcccacctagacccacaatacttattacgctcacatggttgccaccatcattgtctaaaagcaaa 8568415  T
Q  113 aatttggttacttcctctttgtcaccatctctgccatatatgctcgattcatccaccaaagatgtacttggcaatcttttt 193  Q
     | ||| ||| ||  | ||| ||| ||||||| ||||||||||  ||||||||||||||||| | | ||||||||||||||    
T  8568414 taattgattattttatttttatcatcatctctaccatatatgcaagattcatccaccaaagacgcagttggcaatcttttt 8568334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 99 - 163
Target Start/End: Original strand, 6259731 - 6259795
Alignment:
Q  99 tgtcggaaagtaaaaatttggttacttcctctttgtcaccatctctgccatatatgctcgattca 163  Q
    |||| ||||||||||||||| ||| ||||||||| ||||  ||||| ||||||||| | ||||||    
T  6259731 tgtctgaaagtaaaaatttgattatttcctctttttcacgttctctaccatatatgatagattca 6259795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0425 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: scaffold0425
Description:

Target: scaffold0425; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 14 - 78
Target Start/End: Complemental strand, 7042 - 6978
Alignment:
Q  14 ttgtacacaagttgagcaagggtggtttttcccattccacctagacccaccatgctgattattgg 78  Q
    ||||||||||| | ||||||||||||||| ||||| || |||| |||||| ||||||||||||||    
T  7042 ttgtacacaagcttagcaagggtggttttccccatccctcctaaacccactatgctgattattgg 6978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 77
Target Start/End: Complemental strand, 6572864 - 6572800
Alignment:
Q  13 attgtacacaagttgagcaagggtggtttttcccattccacctagacccaccatgctgattattg 77  Q
    |||||| ||||| |||||||||||||| || ||||| ||||| | |||||| |||||||||||||    
T  6572864 attgtagacaagctgagcaagggtggtcttccccatcccacccaaacccactatgctgattattg 6572800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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