View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17645_high_4 (Length: 246)
Name: NF17645_high_4
Description: NF17645
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17645_high_4 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 188; Significance: 1e-102; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 19 - 226
Target Start/End: Complemental strand, 28507308 - 28507101
Alignment:
| Q |
19 |
caaaggacgtggagtggtatgcactgattgggtcccacaaatgaagatattaggtcacatagcagttggtggattcttgactcatgcagggtggacatcg |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28507308 |
caaaggacgtggagtggtatgcactgattgggtcccacaaatgaagatattaggtcacatggcagttggtggattcttgactcatgcagggtggacatcg |
28507209 |
T |
|
| Q |
119 |
gtggtagaggccgttcagaatgagaagccacttgtgttgttgacgtatcttgcagatcaaggaataaatgcaagagtgttggaggaaaagaagatggggt |
218 |
Q |
| |
|
||||||||||| ||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28507208 |
gtggtagaggcagttcaacatgagaagccacttgtgttgttgacgtatctttcagatcaaggaataaatgcaagagtgttggaggaaaagaagatggggt |
28507109 |
T |
|
| Q |
219 |
actcagtg |
226 |
Q |
| |
|
|||||||| |
|
|
| T |
28507108 |
actcagtg |
28507101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 19 - 226
Target Start/End: Complemental strand, 28494762 - 28494555
Alignment:
| Q |
19 |
caaaggacgtggagtggtatgcactgattgggtcccacaaatgaagatattaggtcacatagcagttggtggattcttgactcatgcagggtggacatcg |
118 |
Q |
| |
|
||||| ||||||||||||||||||||| |||| ||||||||||||||||||| | ||| | ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28494762 |
caaagtacgtggagtggtatgcactgaatgggccccacaaatgaagatattaagccacgtggcagttggtggattcttgactcatgcagggtggacatcg |
28494663 |
T |
|
| Q |
119 |
gtggtagaggccgttcagaatgagaagccacttgtgttgttgacgtatcttgcagatcaaggaataaatgcaagagtgttggaggaaaagaagatggggt |
218 |
Q |
| |
|
|||||||| || ||||| |||||||||||||||||||||| |||| |||||||||||||||||||||||||||| ||||||| |||||||||||||| | |
|
|
| T |
28494662 |
gtggtagaagcagttcaacatgagaagccacttgtgttgttaacgtgtcttgcagatcaaggaataaatgcaagaatgttggaagaaaagaagatgggat |
28494563 |
T |
|
| Q |
219 |
actcagtg |
226 |
Q |
| |
|
|||||||| |
|
|
| T |
28494562 |
actcagtg |
28494555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 19 - 215
Target Start/End: Complemental strand, 28491443 - 28491247
Alignment:
| Q |
19 |
caaaggacgtggagtggtatgcactgattgggtcccacaaatgaagatattaggtcacatagcagttggtggattcttgactcatgcagggtggacatcg |
118 |
Q |
| |
|
|||||| || ||||| |||||||||||||||| || ||||||||||||||||| ||||| ||| |||||| ||||| |||| ||||| |||||||| |
|
|
| T |
28491443 |
caaagggcgcggagttgtatgcactgattgggctccgcaaatgaagatattagggcacatggcaattggtgtgttcttttctcacgcaggttggacatca |
28491344 |
T |
|
| Q |
119 |
gtggtagaggccgttcagaatgagaagccacttgtgttgttgacgtatcttgcagatcaaggaataaatgcaagagtgttggaggaaaagaagatgg |
215 |
Q |
| |
|
||||| || || ||||| || |||||||||||||||||| |||| | ||||| ||| || ||||||||||| | |||||||| ||||||||||||| |
|
|
| T |
28491343 |
gtggtggaagcagttcaaaacgagaagccacttgtgttgatgacatttcttgtagaccagggaataaatgcgaaggtgttggaagaaaagaagatgg |
28491247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University