View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17645_low_1 (Length: 586)

Name: NF17645_low_1
Description: NF17645
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17645_low_1
NF17645_low_1
[»] chr5 (18 HSPs)
chr5 (12-568)||(8528475-8529050)
chr5 (296-568)||(8535333-8535608)
chr5 (182-517)||(9074773-9075109)
chr5 (296-530)||(8677637-8677871)
chr5 (296-517)||(1600336-1600554)
chr5 (296-531)||(8644044-8644279)
chr5 (298-531)||(8636701-8636934)
chr5 (179-288)||(8535183-8535294)
chr5 (296-515)||(8548146-8548365)
chr5 (15-89)||(8535045-8535122)
chr5 (135-288)||(8548409-8548562)
chr5 (332-387)||(8641242-8641297)
chr5 (456-534)||(8641357-8641435)
chr5 (403-447)||(2856974-2857018)
chr5 (403-447)||(2874584-2874628)
chr5 (299-387)||(9003305-9003393)
chr5 (215-284)||(1600601-1600670)
chr5 (403-447)||(2845147-2845191)
[»] chr4 (1 HSPs)
chr4 (12-568)||(9442625-9443211)
[»] chr7 (2 HSPs)
chr7 (296-517)||(48361902-48362128)
chr7 (321-488)||(35779694-35779861)
[»] chr1 (1 HSPs)
chr1 (296-517)||(5130638-5130860)
[»] scaffold0627 (1 HSPs)
scaffold0627 (296-391)||(4492-4587)
[»] chr6 (2 HSPs)
chr6 (296-389)||(16716179-16716272)
chr6 (404-510)||(16716299-16716405)


Alignment Details
Target: chr5 (Bit Score: 505; Significance: 0; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 505; E-Value: 0
Query Start/End: Original strand, 12 - 568
Target Start/End: Original strand, 8528475 - 8529050
Alignment:
Q  12 aagaactaaaattataacaaatatataca---tcataaatatattagctgtgaaagcaaatgattgacgaaacatgacaacctttctccaacatgtcgtt 108  Q
    ||||||||||| |||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8528475 aagaactaaaaatataacaaatatatacaacatcataaatatattagctgtgaaagcaaatgattgacgaaacatgacaacctttctccaacatgtcgtt 8528574  T
Q  109 gtgagaatatatctacctaagtaacctaacaacatgtcttcttttctccaaatggaatggaaaaatagtaagtttaaaatataagtgtaacataggaaac 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8528575 gtgagaatatatctacctaagtaacctaacaacatgtcttcttttctccaaatggaatggaaaaatagtaagtttaaaatataagtgtaacataggaaac 8528674  T
Q  209 ttacacaagtccctttgaatactcgactcatgattacaatcaattactatgacttgtaaggaagcatcaaccatcagatt----------------taaa 292  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                ||||    
T  8528675 ttacacaagtccctttgaatactcgactcatgattacaatcaattactatgacttgtaaggaagcatcaaccatcagattcaattgccaataaaaataaa 8528774  T
Q  293 attttaccttgagtggatattcagaacctcaatattgactcctttcaaaacatccttcaatgaaattagacttggaatgtgtgggattacttcaaaataa 392  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8528775 attttaccttgagtggatattcagaacctcaatattgactcctttcaaaacatccttcaatgaaattagacttggaatgtgtgggattacttcaaaataa 8528874  T
Q  393 tttatccgactcccatgaattcgaaaaactttgaacccatatttttcaggttcgtagtaggtaaaacaattggaggaatgatatgacaatatggcagcac 492  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8528875 tttatccgactcccatgaattcgaaaaactttgaacccatatttttcaggttcgtagtaggtaaaacaattggaggaatgatatgacaatatggcagcac 8528974  T
Q  493 cttcttcaaagtgttttatcggccagcttaaaccataaccccgtggaacacgatccaaaggattgaacgaagtatc 568  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8528975 cttcttcaaagtgttttatcggccagcttaaaccataaccccgtggaacacgatccaaaggattgaacgaagtatc 8529050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 178; E-Value: 1e-95
Query Start/End: Original strand, 296 - 568
Target Start/End: Original strand, 8535333 - 8535608
Alignment:
Q  296 ttaccttgagtggatattcagaacctcaatattgactcctttcaaaacatccttcaatgaaattagacttggaatgtgtgggattacttcaaaataattt 395  Q
    |||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  8535333 ttaccttgagtggatattcagaacctcaatattgtcacctttcaaaacatccttcaatgaaattagacttggaatgtgtgggattacttcaaaaaaattt 8535432  T
Q  396 atccgactcccatgaattcgaaaaactttgaacccatatttttcaggttcgtagtaggtaaaacaattggaggaatgatatgacaatatggcagcacctt 495  Q
       | |||||| | |||||||||||||| ||| |||||||| |||||||| |||||| ||||||||||| ||||||||||| ||||||||||||||||||    
T  8535433 gaactactcccgtaaattcgaaaaacttcgaatccatatttctcaggttcatagtagataaaacaattgcaggaatgatataacaatatggcagcacctt 8535532  T
Q  496 cttcaaagtgttttatcggccagcttaaaccataaccccgtggaacacga---tccaaaggattgaacgaagtatc 568  Q
    |||||||||||||||| ||||||||||||||||| | |||||||||||||   ||| |||||||||| ||||||||    
T  8535533 cttcaaagtgttttattggccagcttaaaccatatctccgtggaacacgactttccgaaggattgaatgaagtatc 8535608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 182 - 517
Target Start/End: Complemental strand, 9075109 - 9074773
Alignment:
Q  182 ttaaaatataagtg-taacataggaaacttacacaagtccctttgaatactcgactcatgattacaatcaattactatgacttgtaaggaagcatcaacc 280  Q
    |||||||||||||| ||||||| |||||| || | |||||||||||| ||||  || ||||||| ||| ||||||||||||||||| ||||  || ||      
T  9075109 ttaaaatataagtggtaacataagaaactcactcgagtccctttgaaaactcatcttatgattaaaattaattactatgacttgtacggaaa-ataaagt 9075011  T
Q  281 atcagatttaaaatt-ttaccttgagtggatattcagaacctcaatattgactcctttcaaaacatccttcaatgaaattagacttggaatgtgtgggat 379  Q
    || |||    | ||| ||||||||||||||||||||| ||||| |||||| |||||||||| ||||||||||||||||||||||||||||| ||||||||    
T  9075010 attagaagctacattcttaccttgagtggatattcagcacctcgatattgtctcctttcaagacatccttcaatgaaattagacttggaatatgtgggat 9074911  T
Q  380 tacttcaaaataatttatccgactcccatgaattcgaaaaactttgaacccatatttttcaggttcgtagtaggtaaaacaattggaggaatgatatgac 479  Q
    |||||||||| | |||    |||||||||||||||||||||||||||| |||||||| |||||||| ||| || ||||||||||| || |||||||| ||    
T  9074910 tacttcaaaaaactttgaatgactcccatgaattcgaaaaactttgaatccatatttctcaggttcatagaagataaaacaattgtagcaatgatataac 9074811  T
Q  480 aatatggcagcaccttcttcaaagtgttttatcggcca 517  Q
    ||||||||||||||||||||||||||||||||||||||    
T  9074810 aatatggcagcaccttcttcaaagtgttttatcggcca 9074773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 296 - 530
Target Start/End: Original strand, 8677637 - 8677871
Alignment:
Q  296 ttaccttgagtggatattcagaacctcaatattgactcctttcaaaacatccttcaatgaaattagacttggaatgtgtgggattacttcaaaataattt 395  Q
    ||||||||||||||||||||| |||||||||||| ||||||||| ||||||||||||||| |||||||||||||  ||||| |||| ||||| | ||||     
T  8677637 ttaccttgagtggatattcagcacctcaatattgtctcctttcacaacatccttcaatgagattagacttggaacatgtggaattatttcaaca-aattc 8677735  T
Q  396 atccgac-tcccatgaattcgaaaaactttgaacccatatttttcaggttcgtagtaggtaaaacaattggaggaatgatatgacaatatggcagcacct 494  Q
        ||  | || |||||||||||||||||||| |||| ||| || ||||| |||||| ||| ||||||| ||||||||||| ||||||||||||||||     
T  8677736 ggaagaagtgccgtgaattcgaaaaactttgaaaccatgtttctcgggttcatagtagataagacaattgcaggaatgatataacaatatggcagcaccc 8677835  T
Q  495 tcttcaaagtgttttatcggccagcttaaaccataa 530  Q
    |||||||||||||||| |||||| | ||||||||||    
T  8677836 tcttcaaagtgttttaccggccaacataaaccataa 8677871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 96; E-Value: 9e-47
Query Start/End: Original strand, 296 - 517
Target Start/End: Complemental strand, 1600554 - 1600336
Alignment:
Q  296 ttaccttgagtggatattcagaacctcaatattgactcctttcaaaacatccttcaatgaaattagacttggaatgtgtgggattacttcaaaataattt 395  Q
    ||||||||||||||||||||| |||||||||||| | |||||||| ||||||||||||||||||||||||||||| || ||||||| ||||||| ||| |    
T  1600554 ttaccttgagtggatattcagcacctcaatattgtcccctttcaagacatccttcaatgaaattagacttggaatatgcgggattatttcaaaacaatct 1600455  T
Q  396 atccgactcccatgaattcgaaaaactttgaacccatatttttcaggttcgtagtaggtaaaacaattggaggaatgatatgacaatatggcagcacctt 495  Q
       |||||||||||||||  |||| ||||| | | ||||||  ||||||| || ||| | ||||||||   | ||| |||| ||||||||||||||||||    
T  1600454 gaacgactcccatgaatttcaaaagctttgcatcgatatttcgcaggttcataatagattaaacaatt---gtaatcatataacaatatggcagcacctt 1600358  T
Q  496 cttcaaagtgttttatcggcca 517  Q
    |||||||||||| |||||||||    
T  1600357 cttcaaagtgttgtatcggcca 1600336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 296 - 531
Target Start/End: Original strand, 8644044 - 8644279
Alignment:
Q  296 ttaccttgagtggatattcagaacctcaatattgactcctttcaaaacatccttcaatgaaattagacttggaatgtgtgggattacttcaaaataattt 395  Q
    ||||||||||||||||||||| | |||| ||||| ||||||||| ||||||||||||||| |||||||||||||  ||||| |||| ||||| | ||||     
T  8644044 ttaccttgagtggatattcagcatctcagtattgtctcctttcacaacatccttcaatgagattagacttggaacatgtggaattatttcaaca-aattc 8644142  T
Q  396 atccgac-tcccatgaattcgaaaaactttgaacccatatttttcaggttcgtagtaggtaaaacaattggaggaatgatatgacaatatggcagcacct 494  Q
        ||  | || ||||||||||||||||||||  ||| ||| |  ||||| |||||| ||| ||||||| ||||||||||| ||||||||||||| ||     
T  8644143 ggaagaaatgccgtgaattcgaaaaactttgaaagcatgtttcttgggttcatagtagataagacaattgcaggaatgatataacaatatggcagccccc 8644242  T
Q  495 tcttcaaagtgttttatcggccagcttaaaccataac 531  Q
    |||||||||| ||||| |||||| | |||||||||||    
T  8644243 tcttcaaagttttttaccggccaacataaaccataac 8644279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 298 - 531
Target Start/End: Original strand, 8636701 - 8636934
Alignment:
Q  298 accttgagtggatattcagaacctcaatattgactcctttcaaaacatccttcaatgaaattagacttggaatgtgtgggattacttcaaaataatttat 397  Q
    ||||||||||||||||||| ||||| |||||| |||||||||  |||||||||||||| |||||||||||||  ||||| |||| ||||| | | |        
T  8636701 accttgagtggatattcagcacctcgatattgtctcctttcacgacatccttcaatgagattagacttggaacatgtggaattatttcaacaaactcgga 8636800  T
Q  398 ccgactcccatgaattcgaaaaactttgaacccatatttttcaggttcgtagtaggtaaaacaattggaggaatgatatgacaatatggcagcaccttct 497  Q
       | | || ||||||| |||||||||||| |||  ||| || ||||| |||||| ||| ||||||| ||||||||||| ||||||||||||| || |||    
T  8636801 agaagtgccttgaattctaaaaactttgaaaccaagtttctcgggttcatagtagataagacaattgcaggaatgatataacaatatggcagccccctct 8636900  T
Q  498 tcaaagtgttttatcggccagcttaaaccataac 531  Q
    ||||||||||||| |||||| | || ||||||||    
T  8636901 tcaaagtgttttaccggccatcatataccataac 8636934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 179 - 288
Target Start/End: Original strand, 8535183 - 8535294
Alignment:
Q  179 agtttaaaatataagtg-taacataggaaacttacacaagtccctttgaatactcgactcatgattacaatcaattactatgac-ttgtaaggaagcatc 276  Q
    |||||||||||||| || |||||||||||||||||| |||| |||||||||||||| || ||||||| |||||||||||||||| |||||||| ||||||    
T  8535183 agtttaaaatataactggtaacataggaaacttacagaagttcctttgaatactcgtcttatgattaaaatcaattactatgactttgtaagggagcatc 8535282  T
Q  277 aaccatcagatt 288  Q
    ||||||||||||    
T  8535283 aaccatcagatt 8535294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 296 - 515
Target Start/End: Complemental strand, 8548365 - 8548146
Alignment:
Q  296 ttaccttgagtggatattcagaacctcaatattgactcctttcaaaacatccttcaatgaaattagacttggaatgtgtgggattacttcaaaataattt 395  Q
    |||| |||||||||||||||| |||||||||||| |||||||||  |||||||||||||| |||||||||||||| ||| | |||||||||||  | | |    
T  8548365 ttactttgagtggatattcagcacctcaatattgtctcctttcatgacatccttcaatgagattagacttggaatatgttgaattacttcaaatgattgt 8548266  T
Q  396 atccgactcccatgaattcgaaaaactttgaacccatatttttcaggttcgtagtaggtaaaacaattggaggaatgatatgacaatatggcagcacctt 495  Q
         |   ||||||||||||||| ||||||  |||||||| || || |  ||||| ||||||||||   | ||||||||| |||||| ||||||||| |    
T  8548265 gaagaagagccatgaattcgaaaatctttgactccatatttatcggggttatagtaagtaaaacaatccaatgaatgatataacaatacggcagcaccct 8548166  T
Q  496 cttcaaagtgttttatcggc 515  Q
    ||||||||||||||| ||||    
T  8548165 cttcaaagtgttttaccggc 8548146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 15 - 89
Target Start/End: Original strand, 8535045 - 8535122
Alignment:
Q  15 aactaaaattataacaaatatataca---tcataaatatattagctgtgaaagcaaatgattgacgaaacatgacaac 89  Q
    ||||||| |||||||||||||| |||   ||||||||||||||| ||| ||||||||||||||||||||||| |||||    
T  8535045 aactaaatttataacaaatataaacaacttcataaatatattagttgtaaaagcaaatgattgacgaaacatcacaac 8535122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 135 - 288
Target Start/End: Complemental strand, 8548562 - 8548409
Alignment:
Q  135 taacaacatgtcttcttttctccaaatggaatggaaaaatagtaagtttaaaatataagt-gtaacataggaaacttacacaagtccctttgaatactcg 233  Q
    |||||||| | |||| ||| ||||||| |||||  ||||||| ||||||||| ||||||  |||||| |  ||| | ||||| | ||||||||||||||     
T  8548562 taacaacaagccttcctttatccaaatagaatgccaaaataggaagtttaaa-tataagcagtaacacaaaaaattcacacatgaccctttgaatactca 8548464  T
Q  234 actcatgattacaatcaattactatgacttgtaaggaagcatcaaccatcagatt 288  Q
     || ||||||| ||| ||||||||||| || || || ||||||||||||||||||    
T  8548463 tcttatgattaaaattaattactatgatttttatgggagcatcaaccatcagatt 8548409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 332 - 387
Target Start/End: Original strand, 8641242 - 8641297
Alignment:
Q  332 tcctttcaaaacatccttcaatgaaattagacttggaatgtgtgggattacttcaa 387  Q
    ||||||||  |||||||||||||| |||||||||||||| ||||| ||||||||||    
T  8641242 tcctttcacgacatccttcaatgagattagacttggaatatgtggaattacttcaa 8641297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 456 - 534
Target Start/End: Original strand, 8641357 - 8641435
Alignment:
Q  456 aaacaattggaggaatgatatgacaatatggcagcaccttcttcaaagtgttttatcggccagcttaaaccataacccc 534  Q
    ||||||||| ||||||||||| || |||  |||||||| |||||||||||| ||| |||||| | || |||||||||||    
T  8641357 aaacaattgcaggaatgatataaccataacgcagcaccatcttcaaagtgtattaccggccaacatacaccataacccc 8641435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 403 - 447
Target Start/End: Complemental strand, 2857018 - 2856974
Alignment:
Q  403 tcccatgaattcgaaaaactttgaacccatatttttcaggttcgt 447  Q
    |||| ||||||||||||||||||||||||| ||| ||||||||||    
T  2857018 tcccttgaattcgaaaaactttgaacccatgtttctcaggttcgt 2856974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 403 - 447
Target Start/End: Complemental strand, 2874628 - 2874584
Alignment:
Q  403 tcccatgaattcgaaaaactttgaacccatatttttcaggttcgt 447  Q
    |||| ||||||||||||||||||||||||| ||| ||||||||||    
T  2874628 tcccttgaattcgaaaaactttgaacccatgtttctcaggttcgt 2874584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 299 - 387
Target Start/End: Original strand, 9003305 - 9003393
Alignment:
Q  299 ccttgagtggatattcagaacctcaatattgactcctttcaaaacatccttcaatgaaattagacttggaatgtgtgggattacttcaa 387  Q
    |||||||| || |||||  ||||||| |||| |||| || | | | ||||||||||| |||||||||||||| ||||| ||||||||||    
T  9003305 ccttgagtagacattcaacacctcaacattgtctccatttacagcctccttcaatgagattagacttggaatatgtggaattacttcaa 9003393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 215 - 284
Target Start/End: Complemental strand, 1600670 - 1600601
Alignment:
Q  215 aagtccctttgaatactcgactcatgattacaatcaattactatgacttgtaaggaagcatcaaccatca 284  Q
    ||||||||||||| ||| | || ||||||| ||| ||||||||||||||||| || | |||| |||||||    
T  1600670 aagtccctttgaaaacttgtcttatgattaaaattaattactatgacttgtatgggaacatcgaccatca 1600601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 403 - 447
Target Start/End: Complemental strand, 2845191 - 2845147
Alignment:
Q  403 tcccatgaattcgaaaaactttgaacccatatttttcaggttcgt 447  Q
    |||| ||||||||||||||||||||| ||| ||| ||||||||||    
T  2845191 tcccttgaattcgaaaaactttgaactcatgtttctcaggttcgt 2845147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 430; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 430; E-Value: 0
Query Start/End: Original strand, 12 - 568
Target Start/End: Original strand, 9442625 - 9443211
Alignment:
Q  12 aagaactaaaattataacaaatatataca---tcataaatatattagctgtgaaagcaaatgattgacgaaacatgacaacctttctccaacatgtc--- 105  Q
    ||||||||||| |||||||||||||||||   |||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||       
T  9442625 aagaactaaaaatataacaaatatatacaacatcataaatatattagctgcgaaagcaaatgattgacgaaacatcacaacctttctccaacatgtctcc 9442724  T
Q  106 --------gttgtgagaatatatctacctaagtaacctaacaacatgtcttcttttctccaaatggaatggaaaaatagtaagtttaaaatataagtgta 197  Q
            |||||||||||||||| ||| ||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  9442725 aacatgtcgttgtgagaatatatcaaccgaagtaacctaacaacatgttttcttttctccaaatggaatggcaaaatagtaagtttaaaatataagtgta 9442824  T
Q  198 acataggaaacttacacaagtccctttgaatactcgactcatgattacaatcaattactatgacttgtaaggaagcatcaaccatcagatt--------- 288  Q
    |||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||| ||||||||||||||||||||             
T  9442825 acataggaaacttacacaagtccctttgaatactcatctcatgattacaatcaattactatgacttgtaaagaagcatcaaccatcagattcaattgcca 9442924  T
Q  289 -------taaaattttaccttgagtggatattcagaacctcaatattgactcctttcaaaacatccttcaatgaaattagacttggaatgtgtgggatta 381  Q
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  9442925 ataaaaataaaattttaccttgagtggatattcagaacctcaatattgactcctttcaaaacatccttcaatgaaattagacttggaatgtgttggatta 9443024  T
Q  382 cttcaaaataatttatccgactcccatgaattcgaaaaactttgaacccatatttttcaggttcgtagtaggtaaaacaattggaggaatgatatgacaa 481  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  9443025 cttcaaaataatttttccgactcccatgaattcgaaaaactttgaacccatatttttcaggttcgtagtaggtaaaacaattgaaggaatgatatgacaa 9443124  T
Q  482 tatggcagcaccttcttcaaagtgttttatcggccagcttaaaccataaccccgtggaacacgatccaaaggattgaacgaagtatc 568  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9443125 tatggcagcaccttcttcaaagtgttttatcggccagcttaaaccataaccccgtggaacacgatccaaaggattgaacgaagtatc 9443211  T

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Target: chr7 (Bit Score: 83; Significance: 5e-39; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 296 - 517
Target Start/End: Complemental strand, 48362128 - 48361902
Alignment:
Q  296 ttaccttgagtggatattcagaacctcaatattgactcctttcaaaacatccttcaatgaaatta-----gacttggaatgtgtgggattacttcaaaat 390  Q
    |||||||||||||| |||||  ||||| |||||  |||||||||| |||||||||||||||||||     |||||||||| ||||||||||||||||||     
T  48362128 ttaccttgagtggacattcaacacctccatattatctcctttcaagacatccttcaatgaaattaaattagacttggaatatgtgggattacttcaaaag 48362029  T
Q  391 aatttatccgactcccatgaattcgaaaaactttgaacccatatttttcaggttcgtagtaggtaaaacaattggaggaatgatatgacaatatggcagc 490  Q
    ||  |   |||||||| |||||  ||||| ||||| | | |||||| |||||||| || ||| | ||||  | | ||||||||||| |||||||||||||    
T  48362028 aacctgaacgactcccgtgaatatgaaaagctttgcatctatatttctcaggttcataatagattaaacggtcgtaggaatgatataacaatatggcagc 48361929  T
Q  491 accttcttcaaagtgttttatcggcca 517  Q
    |||||||||||||||||||||||||||    
T  48361928 accttcttcaaagtgttttatcggcca 48361902  T

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Target: chr7; HSP #2
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 321 - 488
Target Start/End: Original strand, 35779694 - 35779861
Alignment:
Q  321 tcaatattgactcctttcaaaacatccttcaatgaaattagacttggaatgtgtgggattacttcaaaataatttatccgactcccatgaattcgaaaaa 420  Q
    ||||||||| ||||||| | ||||||||||||||| |||||||||||||| ||||| |||||||||| | | |||   ||| ||||| ||||||||||||    
T  35779694 tcaatattgtctccttttacaacatccttcaatgatattagacttggaatatgtggaattacttcaacagattttgaacgagtcccacgaattcgaaaaa 35779793  T
Q  421 ctttgaacccatatttttcaggttcgtagtaggtaaaacaattggaggaatgatatgacaatatggca 488  Q
    ||||| | |||||||| ||||||||  ||||| ||||||||||| | ||||||||| |||||||||||    
T  35779794 ctttgtatccatatttctcaggttcaaagtagataaaacaattgcatgaatgatataacaatatggca 35779861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 79; Significance: 1e-36; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 296 - 517
Target Start/End: Original strand, 5130638 - 5130860
Alignment:
Q  296 ttaccttgagtggatattcagaacctcaatattgactcctttcaaaacatccttcaatgaaattagacttggaatgtgtgggattacttcaaaataattt 395  Q
    |||||||||||| |||||||| |||||||||||| ||||||||| || |||||| | |||||||||||||| ||| ||||| ||||||||||  |  |||    
T  5130638 ttaccttgagtgaatattcagcacctcaatattgtctcctttcacaatatcctttagtgaaattagacttgaaatatgtggaattacttcaatctttttt 5130737  T
Q  396 atccgactcccatgaattcgaaaaactttgaacccatatttttcaggttcgtagt-aggtaaaacaattggaggaatgatatgacaatatggcagcacct 494  Q
       | | ||||||||||||||||||||||| | | |||||| || ||||| | || ||  |||||| ||| |||||||||||  |||||||||||||||     
T  5130738 gaacaagtcccatgaattcgaaaaactttgtatctatatttctccggttcatggtaagacaaaacagttgcaggaatgatatagcaatatggcagcaccc 5130837  T
Q  495 tcttcaaagtgttttatcggcca 517  Q
    |||||||||||||||| ||||||    
T  5130838 tcttcaaagtgttttaccggcca 5130860  T

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Target: scaffold0627 (Bit Score: 60; Significance: 3e-25; HSPs: 1)
Name: scaffold0627
Description:

Target: scaffold0627; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 296 - 391
Target Start/End: Original strand, 4492 - 4587
Alignment:
Q  296 ttaccttgagtggatattcagaacctcaatattgactcctttcaaaacatccttcaatgaaattagacttggaatgtgtgggattacttcaaaata 391  Q
    ||||||||||||||||||||  |||||||||||| |||||||||   ||||||||||||| |||||||||||||| ||||| ||||||||||||||    
T  4492 ttaccttgagtggatattcaacacctcaatattgtctcctttcacggcatccttcaatgagattagacttggaatatgtggaattacttcaaaata 4587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 296 - 389
Target Start/End: Original strand, 16716179 - 16716272
Alignment:
Q  296 ttaccttgagtggatattcagaacctcaatattgactcctttcaaaacatccttcaatgaaattagacttggaatgtgtgggattacttcaaaa 389  Q
    ||||||||||||||||||||  |||||||||||  |||||||||   ||||||||||||| |||||||||||||| ||||| ||||||| ||||    
T  16716179 ttaccttgagtggatattcaacacctcaatattctctcctttcacggcatccttcaatgagattagacttggaatatgtggaattactttaaaa 16716272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 404 - 510
Target Start/End: Original strand, 16716299 - 16716405
Alignment:
Q  404 cccatgaattcgaaaaactttgaacccatatttttcaggttcgtagtaggtaaaacaattggaggaatgatatgacaatatggcagcaccttcttcaaag 503  Q
    ||||||||||||||||   ||||  |||||||| | ||| || ||||| ||||||||||     ||||||||| |||||| | ||||||| |||||||||    
T  16716299 cccatgaattcgaaaacgcttgacaccatatttattaggctcatagtaagtaaaacaatcatttgaatgatataacaatacgccagcaccctcttcaaag 16716398  T
Q  504 tgtttta 510  Q
    |||||||    
T  16716399 tgtttta 16716405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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