View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17645_low_2 (Length: 503)
Name: NF17645_low_2
Description: NF17645
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17645_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 448; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 448; E-Value: 0
Query Start/End: Original strand, 17 - 493
Target Start/End: Original strand, 53676628 - 53677108
Alignment:
| Q |
17 |
ccttttcccaaaagtaatgaattatctacatcaactgcacacataacagatagtaaaattttcagcattgaaaagttccatgacaaatatgcagacaagc |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53676628 |
ccttttcccaaaagtaatgaattatctacatcaactgcacacataacagatagtaaaattttcagcattgaaaagttccatgacaaatatgcagacaagc |
53676727 |
T |
|
| Q |
117 |
taaataaaattacaatttctacgtcattgttcctaaatcctcaacttgagtccacaagcatgcttctacttccacaattttctacatcattattcatttc |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
53676728 |
taaataaaattacaatttctacgtcattgttcctaaatcctcaacttgagtccacaagcaggcttctacttccacaattttctacatcattattcatttc |
53676827 |
T |
|
| Q |
217 |
aaattacaattccttaacatcataaactactttcgttcttaaccaactttcaattcttagcagcatttcaacaaacacattccttagtagaatcacaaat |
316 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53676828 |
aaattacaattccttaacatcataaactactttcgttcttaaccaactttcaattcttagcagcatttcaacaaacacattccttagtagaatcacaaat |
53676927 |
T |
|
| Q |
317 |
gagtaatgagtaacattaaattaaattgtgttaaag----acatacagagtatagattcaacaaattgtctaaactctaaaatgaaattgaaatattcat |
412 |
Q |
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|||||||||||||||||||||||||||||||| ||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53676928 |
gagtaatgagtaacattaaattaaattgtgttcaagacatacatacagaatatagattcaacaaattgtctaaactctaaaatgaaattgaaatattcat |
53677027 |
T |
|
| Q |
413 |
cctaatcctgattcctattctttaatttcaatatctactttcccttaatttaaattcaattattttctttcctagtataat |
493 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
53677028 |
cctaatcctgattcctattctttaatttcaatatctactttcccttaatttaaattcaattattttctttcctagcataat |
53677108 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 144; Significance: 2e-75; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 92 - 297
Target Start/End: Original strand, 34131071 - 34131280
Alignment:
| Q |
92 |
ttccatgacaaatatgcagacaagctaaataaaattacaatttctacgtca---ttgttcctaaatcctcaacttgagtccacaagcatgcttctacttc |
188 |
Q |
| |
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|||||||||||||||||||||||| ||||||||||||||||||||| |||| |||||||||||||||||||| |||||||||||||||||||||| || |
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| T |
34131071 |
ttccatgacaaatatgcagacaagttaaataaaattacaatttctatgtcaatattgttcctaaatcctcaactggagtccacaagcatgcttctacctc |
34131170 |
T |
|
| Q |
189 |
cacaattttctacatcattattcatttcaaattacaattccttaacatcataaactac-tttcgttcttaaccaactttcaattcttagcagcatttcaa |
287 |
Q |
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||||||||||| ||||||||||||||||||||||||||| ||| ||||||||| ||| ||||||||||||||||||||||| ||||||||||||| ||| |
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| T |
34131171 |
tacaattttctaaatcattattcatttcaaattacaattcgttagcatcataaattacttttcgttcttaaccaactttcaactcttagcagcattacaa |
34131270 |
T |
|
| Q |
288 |
caaacacatt |
297 |
Q |
| |
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|||||||||| |
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|
| T |
34131271 |
caaacacatt |
34131280 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 293 - 407
Target Start/End: Original strand, 34139200 - 34139310
Alignment:
| Q |
293 |
acattccttagtagaatcacaaatgagtaatgagtaacattaaattaaattgtgttaaagacatacagagtatagattcaacaaattgtctaaactct-a |
391 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||| | |||||||||||||| ||||||||||||| | |
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| T |
34139200 |
acattccttataagaatcacaaatgagtaatgagt-----taaattaaattgtgttaaagacatacaaaatatagattcaacaagttgtctaaactctaa |
34139294 |
T |
|
| Q |
392 |
aaatgaaattgaaata |
407 |
Q |
| |
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|||| ||||||||||| |
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|
| T |
34139295 |
aaataaaattgaaata |
34139310 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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