View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17645_low_3 (Length: 401)
Name: NF17645_low_3
Description: NF17645
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17645_low_3 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 344; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 12 - 401
Target Start/End: Original strand, 43334659 - 43335050
Alignment:
| Q |
12 |
aattctaatcaatgacatgttgatacaatcaaaagtacacaagatgttgatttaacatataattgagcattagtagatattggtgtaaggtgtgcattga |
111 |
Q |
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| T |
43334659 |
aattctaatcaatgagatgttgatacaatcaaaagtacacaagatgttgatttaacatatgattgagcattagtagatattggtgtaaggtgtgcattga |
43334758 |
T |
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| Q |
112 |
gattatgtcggtggttgaaaaacttcctatttctatcaacatggaagttgcaccataaatttttagacctattatcaacatttagaaattatggaagtga |
211 |
Q |
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| T |
43334759 |
gattatgtcggtggttgaaaaactttctatttttatcaatatggaagttgcaccataaatttttagacctattatcaacatttagaaattatggaagtga |
43334858 |
T |
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| Q |
212 |
tttaacttcaagtaaa-tatattgtttatgacagagtgtaatagttttttcaactataattgattaattgtcatcttaaacaatgt-aaaaatcttgaag |
309 |
Q |
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| T |
43334859 |
tttaacttcaagtaaagtatattgtttatgacagagtgtaatagttttttcaactataattgattaattgtcaccttaaacaatgtaaaaaatcttgaag |
43334958 |
T |
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| Q |
310 |
tgatttagctaatgtaaaaatttagatcaacgtgccttttctcattcagggtcctaacaataacggctaggaaaaacttaagtaagacatga |
401 |
Q |
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| T |
43334959 |
tgatttagataatgtaaaaatttagatcaacgtgccttttctcattcagggtcctaacaataacggctaggaaaaacttaattaagacatga |
43335050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 148 - 177
Target Start/End: Original strand, 16387998 - 16388027
Alignment:
| Q |
148 |
caacatggaagttgcaccataaatttttag |
177 |
Q |
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| T |
16387998 |
caacatggaagttgcaccataaatttttag |
16388027 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 109 - 137
Target Start/End: Original strand, 35113479 - 35113507
Alignment:
| Q |
109 |
tgagattatgtcggtggttgaaaaacttc |
137 |
Q |
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| T |
35113479 |
tgagattatgtcggtggttgaaaaacttc |
35113507 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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