View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17645_low_4 (Length: 364)
Name: NF17645_low_4
Description: NF17645
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17645_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 309; Significance: 1e-174; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 14 - 350
Target Start/End: Original strand, 6865861 - 6866197
Alignment:
| Q |
14 |
tactggaatgtcacccttatcgtcatcagctttgattttaatggttagtagatcatttcctcctttgttaagcatccactcaacaatttgtatatcgtcg |
113 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| |
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| T |
6865861 |
tactggaatgtcacccttatcgtcatcagctttgattttcatggttagtagatcatttcctcctttgttaagcatccactcgacaattttaatatcgtcg |
6865960 |
T |
|
| Q |
114 |
gttgatttaacagcaagagcaaaaggtgtgtagccctcccaatcttcctctgtcagcaatgcccccatttcaaccaactccttcatgattttatcttgtc |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6865961 |
gttgatttaacagcaagagcaaaaggtgtgtagccctcccaatcttcctctgtcagcaatgcccccatttcaaccaactccttcatgattttatcttgtc |
6866060 |
T |
|
| Q |
214 |
ctgcatcaactgcaacgtgaagagaagtccagcctttagaggacgacttttgagaaataatatctccatcttgtctgataaacagaattgcatcattcca |
313 |
Q |
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|||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
6866061 |
ctgcatcaactgcaacatgaagagaagtccagcctttcgaggacgacttttgagaaataatatctccatcttggctgataaacagaattgcatcattcca |
6866160 |
T |
|
| Q |
314 |
catgcctttcttcagtgccacatgaaacttgtcaatg |
350 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| |
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| T |
6866161 |
catgcctttcttcagtgccacatgaaacttgtcaatg |
6866197 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 14 - 350
Target Start/End: Complemental strand, 6088534 - 6088198
Alignment:
| Q |
14 |
tactggaatgtcacccttatcgtcatcagctttgattttaatggttagtagatcatttcctcctttgttaagcatccactcaacaatttgtatatcgtcg |
113 |
Q |
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||||||||||||||| |||| |||| |||||||||||| |||||||| |||||| ||||||||| ||||||||||||||||||||||||||||| | |
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| T |
6088534 |
tactggaatgtcacctttattatcattagctttgattttcatggttagaagatcagctcctcctttattaagcatccactcaacaatttgtatatcatta |
6088435 |
T |
|
| Q |
114 |
gttgatttaacagcaagagcaaaaggtgtgtagccctcccaatcttcctctgtcagcaatgcccccatttcaaccaactccttcatgattttatcttgtc |
213 |
Q |
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||||||||||||||||||||||| |||||||| |||||||||||| |||||||| |||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
6088434 |
gttgatttaacagcaagagcaaagggtgtgtatccctcccaatctctctctgtcaacaatgcccccattttaaccaactccttcatgattttatcttgtc |
6088335 |
T |
|
| Q |
214 |
ctgcatcaactgcaacgtgaagagaagtccagcctttagaggacgacttttgagaaataatatctccatcttgtctgataaacagaattgcatcattcca |
313 |
Q |
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| ||||||||||||||||||||||||||||| || ||| |||| |||||||| ||||||||||||||||| ||||||| || | |||||| || ||||| |
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| T |
6088334 |
cagcatcaactgcaacgtgaagagaagtccaaccattaaaggatgacttttgtgaaataatatctccatcacgtctgatgaagaaaattgcgtcgttcca |
6088235 |
T |
|
| Q |
314 |
catgcctttcttcagtgccacatgaaacttgtcaatg |
350 |
Q |
| |
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|||||||||||||| ||||||||||||| |||||||| |
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| T |
6088234 |
catgcctttcttcactgccacatgaaacatgtcaatg |
6088198 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 14 - 349
Target Start/End: Original strand, 6133136 - 6133471
Alignment:
| Q |
14 |
tactggaatgtcacccttatcgtcatcagctttgattttaatggttagtagatcatttcctcctttgttaagcatccactcaacaatttgtatatcgtcg |
113 |
Q |
| |
|
||||||||||||||| ||| | ||||||||||| ||||| || || ||||||||||||||||| || ||||||||||| ||| |||| | |||| || |
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| T |
6133136 |
tactggaatgtcacctttaccatcatcagcttttattttcattgtcagtagatcatttcctcccttagcaagcatccacttaaccatttttgtatcatct |
6133235 |
T |
|
| Q |
114 |
gttgatttaacagcaagagcaaaaggtgtgtagccctcccaatcttcctctgtcagcaatgcccccatttcaaccaactccttcatgattttatcttgtc |
213 |
Q |
| |
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||||||||| |||| |||||||| |||||||| |||||||| |||| |||||||||||||||||||||||||||||||| || ||||||||||||||||| |
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| T |
6133236 |
gttgatttagcagcgagagcaaacggtgtgtatccctcccagtctttctctgtcagcaatgcccccatttcaaccaacttctgcatgattttatcttgtc |
6133335 |
T |
|
| Q |
214 |
ctgcatcaactgcaacgtgaagagaagtccagcctttagaggacgacttttgagaaataatatctccatcttgtctgataaacagaattgcatcattcca |
313 |
Q |
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||||||||||||||||||||||||||||||| || ||||||| |||||||| |||||||||||||| || | |||||||||| ||| || |||||||| |
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| T |
6133336 |
ctgcatcaactgcaacgtgaagagaagtccaaccattagagggtgacttttgcgaaataatatctccgtcattcctgataaacaaaatcgcgtcattcca |
6133435 |
T |
|
| Q |
314 |
catgcctttcttcagtgccacatgaaacttgtcaat |
349 |
Q |
| |
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|||||||||||||| ||| ||||||||||||||||| |
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| T |
6133436 |
catgcctttcttcactgctacatgaaacttgtcaat |
6133471 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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