View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17645_low_5 (Length: 315)
Name: NF17645_low_5
Description: NF17645
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17645_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 301; Significance: 1e-169; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 1 - 305
Target Start/End: Original strand, 4301625 - 4301929
Alignment:
| Q |
1 |
cgaaaggaacataagtcaaactccaagaaagatgattctgaagacattgatgaagccaattctgaagtgtatgtcttgagttttgctagatacaagaata |
100 |
Q |
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| T |
4301625 |
cgaaaggaacataagtcaaattccaagaaagatgattctgaagacattgatgaagccaattctgaagtgtatgtcttgagttttgctagatacaagaata |
4301724 |
T |
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| Q |
101 |
tagtgatgttgttggggtactgttgcaaagaaaataaaaatattatcatatatgaatttatttgcgataagtctcttcattggtatttatttgaaaatag |
200 |
Q |
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| T |
4301725 |
tagtgatgttgttggggtactgttgcaaagaaaataaaaatattatcatatatgaatttatttgcgataagtctcttcattggtatttatttgaaaatag |
4301824 |
T |
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| Q |
201 |
tgaagtagttattgattggcctcgaagatatggtattgcacttgggattgtatttgagaaaagaggaattgataaaacacaacccttgaaatttgtaact |
300 |
Q |
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| T |
4301825 |
tgaagtagttattgattggcctcgaagatatggtattgcacttgggattgtatttgagaaaagaggaattgataaaacacaacccttgaaatttgtaact |
4301924 |
T |
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| Q |
301 |
gatga |
305 |
Q |
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||||| |
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| T |
4301925 |
gatga |
4301929 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 99; Significance: 7e-49; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 59 - 193
Target Start/End: Original strand, 40668093 - 40668227
Alignment:
| Q |
59 |
attctgaagtgtatgtcttgagttttgctagatacaagaatatagtgatgttgttggggtactgttgcaaagaaaataaaaatattatcatatatgaatt |
158 |
Q |
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| T |
40668093 |
attctgaggtttatgtcttgagttttgctagacacaagaatatagtgatgctgttggggtattgttgcaaagaaaataaaaatattctcatatatgaata |
40668192 |
T |
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| Q |
159 |
tatttgcgataagtctcttcattggtatttatttg |
193 |
Q |
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| T |
40668193 |
tatttgcaataagtctcttcattggcatttatttg |
40668227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 193 - 250
Target Start/End: Original strand, 40668312 - 40668369
Alignment:
| Q |
193 |
gaaaatagtgaagtagttattgattggcctcgaagatatggtattgcacttgggattg |
250 |
Q |
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||||||||||||| |||| |||||||| ||| |||||||||||||||||||||||||| |
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| T |
40668312 |
gaaaatagtgaagcagttcttgattggtctcaaagatatggtattgcacttgggattg |
40668369 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 33959110 - 33959044
Alignment:
| Q |
1 |
cgaaaggaacataagtcaaactccaagaaagatgattctgaagacattgatgaagccaattctgaag |
67 |
Q |
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|||||||| ||||||||||| | ||| ||||||||||||||||||| ||||||||||| ||||||| |
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| T |
33959110 |
cgaaaggagcataagtcaaatacaaagcaagatgattctgaagacatagatgaagccaagtctgaag |
33959044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 249 - 305
Target Start/End: Original strand, 5085365 - 5085421
Alignment:
| Q |
249 |
tgtatttgagaaaagaggaattgataaaacacaacccttgaaatttgtaactgatga |
305 |
Q |
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|||||| |||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
5085365 |
tgtattcgagaaaagaggaattgatgaaacacaacccttgaaatttgtaactgatga |
5085421 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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