View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17645_low_6 (Length: 314)
Name: NF17645_low_6
Description: NF17645
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17645_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 286; Significance: 1e-160; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 19 - 304
Target Start/End: Complemental strand, 29204735 - 29204450
Alignment:
| Q |
19 |
tgcatccctcctcaagttggtgacaattagaaaacaaactaggcaggacatattttggtacaaggactttacacaacacaatttttgtcaattttcccat |
118 |
Q |
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| T |
29204735 |
tgcatccctcctcaagttggtgacaattagaaaacaaactaggcaggacatattttggtacaaggactttacacaacacaatttttgtcaattttcccat |
29204636 |
T |
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| Q |
119 |
tccacaaaacacatcaggcggcattagtatacatacaattgcagttaaccttttgataacttaggagccttgatacttcgaaatataaatgtatgtacca |
218 |
Q |
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| T |
29204635 |
tccacaaaacacatcaggcggcattagtatacatacaattgcagttaaccttttgataacttaggagccttgatacttcgaaatataaatgtatgtacca |
29204536 |
T |
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| Q |
219 |
gggttactactatactcaaaggatgagagatttaatgcgaagatgtctatcttgagtttccaaggaggaagcagacggcgcctatg |
304 |
Q |
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| T |
29204535 |
gggttactactatactcaaaggatgagagatttaatgcgaagatgtctatcttgagtttccaaggaggaagcagacggcgcctatg |
29204450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 27 - 146
Target Start/End: Original strand, 29195691 - 29195810
Alignment:
| Q |
27 |
tcctcaagttggtgacaattagaaaacaaactaggcaggacatattttggtacaaggactttacacaacacaatttttgtcaattttcccattccacaaa |
126 |
Q |
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||||||||||| ||||| |||||||||||||||||||| | || |||||| ||||| |||| | |||||||||||||||||| ||| |||||||||| |
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| T |
29195691 |
tcctcaagttgatgacatttagaaaacaaactaggcagaaaatcttttggcacaagaacttgaaccaacacaatttttgtcaagttttttattccacaaa |
29195790 |
T |
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| Q |
127 |
acacatcaggcggcattagt |
146 |
Q |
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| T |
29195791 |
acacatcaggtggcattagt |
29195810 |
T |
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