View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17645_low_7 (Length: 253)
Name: NF17645_low_7
Description: NF17645
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17645_low_7 |
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Alignment Details
Target: chr6 (Bit Score: 180; Significance: 3e-97; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 13 - 216
Target Start/End: Complemental strand, 11582175 - 11581973
Alignment:
| Q |
13 |
aatacaaatattgaagcgtttgatcaaaattgacagtcaaaattctgaaccagtaactggccttgcattggatgttcgtcataaggtacaatcttagatg |
112 |
Q |
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| T |
11582175 |
aatacaaatattgaagcgtttgatcaaaattgacagtcaaaattctgaaccagtaactggccttgcattggatgttcgtcgtaaggtacaatcttagatg |
11582076 |
T |
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| Q |
113 |
taaaaatacctacatattttttcttatagggtttagtttatataatttttggttcataacatgtgatttaatgcattacattgaattgatgatttatgat |
212 |
Q |
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| T |
11582075 |
taaaaatacctacatattttttcttatagggtttagtttatatgatttttggttcataacatgtcattt-atgcattacattgaattgatgatttgtgat |
11581977 |
T |
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| Q |
213 |
ttaa |
216 |
Q |
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|||| |
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| T |
11581976 |
ttaa |
11581973 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 16 - 216
Target Start/End: Complemental strand, 11588490 - 11588291
Alignment:
| Q |
16 |
acaaatattgaagcgtttgatcaaaattgacagtcaaaattctgaaccagtaactggccttgcattggatgttcgtcataaggtacaatcttagatgtaa |
115 |
Q |
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|||||||||||||| ||||||||||||||||| |||||||||| ||||| || | |||||||| |||||||| || |||||||||| |||||||||| |
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| T |
11588490 |
acaaatattgaagcatttgatcaaaattgacaatcaaaattctaaaccaagaagtcgccttgcaagggatgttcatccaaaggtacaatgttagatgtaa |
11588391 |
T |
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| Q |
116 |
aaatacctacatattttttcttatagggtttagtttatataatttttggttcataacatgtgatttaatgcattacattgaattgatgatttatgattta |
215 |
Q |
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| T |
11588390 |
aattatttacgaattttatcatata-gttttaggctctatgatttttggttcatgacatttcatttaactcattatatttaattgatgatttatgattta |
11588292 |
T |
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