View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17646_high_4 (Length: 202)

Name: NF17646_high_4
Description: NF17646
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17646_high_4
NF17646_high_4
[»] scaffold0055 (7 HSPs)
scaffold0055 (15-182)||(50566-50733)
scaffold0055 (15-182)||(79567-79734)
scaffold0055 (15-182)||(41318-41485)
scaffold0055 (15-182)||(71900-72067)
scaffold0055 (15-182)||(66189-66356)
scaffold0055 (43-182)||(32032-32171)
scaffold0055 (82-182)||(69088-69188)
[»] scaffold0052 (7 HSPs)
scaffold0052 (15-182)||(25091-25258)
scaffold0052 (15-182)||(30718-30885)
scaffold0052 (15-182)||(47473-47640)
scaffold0052 (15-182)||(5921-6088)
scaffold0052 (15-182)||(26953-27120)
scaffold0052 (15-182)||(35572-35739)
scaffold0052 (43-182)||(63894-64033)
[»] scaffold0021 (2 HSPs)
scaffold0021 (15-182)||(45735-45902)
scaffold0021 (15-57)||(62678-62720)
[»] scaffold0515 (1 HSPs)
scaffold0515 (15-182)||(7654-7821)
[»] scaffold0306 (1 HSPs)
scaffold0306 (15-182)||(7664-7831)
[»] scaffold0152 (1 HSPs)
scaffold0152 (15-182)||(25275-25442)


Alignment Details
Target: scaffold0055 (Bit Score: 168; Significance: 3e-90; HSPs: 7)
Name: scaffold0055
Description:

Target: scaffold0055; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 15 - 182
Target Start/End: Original strand, 50566 - 50733
Alignment:
15 caaagggcagggacgtagtcaacgcgagctgatgactcgcgcttactaggaattcctcgttgaagaccaacaattgcaatgatctatccccatcacgatg 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
50566 caaagggcagggacgtagtcaacgcgagctgatgactcgcgcttactaggaattcctcgttgaagaccaacaattgcaatgatctatccccatcacgatg 50665  T
115 aaatttcaaagattacccgggcctgtcggccaaggctatagactcgttgaatacatcagtgtagcgcg 182  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
50666 aaatttcaaagattacccgggcctgtcggccaaggctatagactcgttgaatacatcagtgtagcgcg 50733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0055; HSP #2
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 15 - 182
Target Start/End: Original strand, 79567 - 79734
Alignment:
15 caaagggcagggacgtagtcaacgcgagctgatgactcgcgcttactaggaattcctcgttgaagaccaacaattgcaatgatctatccccatcacgatg 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
79567 caaagggcagggacgtagtcaacgcgagctgatgactcgcgcttactaggaattcctcgttgaagaccaacaattgcaatgatctatccccatcacgatg 79666  T
115 aaatttcaaagattacccgggcctgtcggccaaggctatagactcgttgaatacatcagtgtagcgcg 182  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
79667 aaatttcaaagattacccgggcctgtcggccaaggctatagactcgttgaatacatcagtgtagcgcg 79734  T

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Target: scaffold0055; HSP #3
Raw Score: 164; E-Value: 7e-88
Query Start/End: Original strand, 15 - 182
Target Start/End: Original strand, 41318 - 41485
Alignment:
15 caaagggcagggacgtagtcaacgcgagctgatgactcgcgcttactaggaattcctcgttgaagaccaacaattgcaatgatctatccccatcacgatg 114  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
41318 caaagggcagggacgtagtcaacgcgtgctgatgactcgcgcttactaggaattcctcgttgaagaccaacaattgcaatgatctatccccatcacgatg 41417  T
115 aaatttcaaagattacccgggcctgtcggccaaggctatagactcgttgaatacatcagtgtagcgcg 182  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
41418 aaatttcaaagattacccgggcctgtcggccaaggctatagactcgttgaatacatcagtgtagcgcg 41485  T

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Target: scaffold0055; HSP #4
Raw Score: 164; E-Value: 7e-88
Query Start/End: Original strand, 15 - 182
Target Start/End: Complemental strand, 72067 - 71900
Alignment:
15 caaagggcagggacgtagtcaacgcgagctgatgactcgcgcttactaggaattcctcgttgaagaccaacaattgcaatgatctatccccatcacgatg 114  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
72067 caaagggcagggacgtagtcaacgcgagctgatgactcgcgcttactaggaattcctcgtcgaagaccaacaattgcaatgatctatccccatcacgatg 71968  T
115 aaatttcaaagattacccgggcctgtcggccaaggctatagactcgttgaatacatcagtgtagcgcg 182  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
71967 aaatttcaaagattacccgggcctgtcggccaaggctatagactcgttgaatacatcagtgtagcgcg 71900  T

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Target: scaffold0055; HSP #5
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 15 - 182
Target Start/End: Original strand, 66189 - 66356
Alignment:
15 caaagggcagggacgtagtcaacgcgagctgatgactcgcgcttactaggaattcctcgttgaagaccaacaattgcaatgatctatccccatcacgatg 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||    
66189 caaagggcagggacgtagtcaacgcgagctgatgactcgcgcttactaggaattcctcgttgaagaccaacaattgcaatgatctatcttcatcacgatg 66288  T
115 aaatttcaaagattacccgggcctgtcggccaaggctatagactcgttgaatacatcagtgtagcgcg 182  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
66289 aaatttcaaagattacccgggcctgtcggccaaggctatagactcgttgaatacatcagtgtagcgcg 66356  T

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Target: scaffold0055; HSP #6
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 43 - 182
Target Start/End: Original strand, 32032 - 32171
Alignment:
43 ctgatgactcgcgcttactaggaattcctcgttgaagaccaacaattgcaatgatctatccccatcacgatgaaatttcaaagattacccgggcctgtcg 142  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
32032 ctgatgactcgcgcttactaggaattcctcattgaagaccaacaattgcaatgatctatccccatcacgatgaaatttcaaagattacccgggcctgtcg 32131  T
143 gccaaggctatagactcgttgaatacatcagtgtagcgcg 182  Q
    ||||||||||||||||||||||||||||||||||||||||    
32132 gccaaggctatagactcgttgaatacatcagtgtagcgcg 32171  T

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Target: scaffold0055; HSP #7
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 82 - 182
Target Start/End: Original strand, 69088 - 69188
Alignment:
82 caacaattgcaatgatctatccccatcacgatgaaatttcaaagattacccgggcctgtcggccaaggctatagactcgttgaatacatcagtgtagcgc 181  Q
    |||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
69088 caacaattgcaatgatctatcttcatcacgatgaaatttcaaagattacccgggcctgtcggccaaggctatagactcgttgaatacatcagtgtagcgc 69187  T
182 g 182  Q
    |    
69188 g 69188  T

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Target: scaffold0052 (Bit Score: 168; Significance: 3e-90; HSPs: 7)
Name: scaffold0052
Description:

Target: scaffold0052; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 15 - 182
Target Start/End: Original strand, 25091 - 25258
Alignment:
15 caaagggcagggacgtagtcaacgcgagctgatgactcgcgcttactaggaattcctcgttgaagaccaacaattgcaatgatctatccccatcacgatg 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
25091 caaagggcagggacgtagtcaacgcgagctgatgactcgcgcttactaggaattcctcgttgaagaccaacaattgcaatgatctatccccatcacgatg 25190  T
115 aaatttcaaagattacccgggcctgtcggccaaggctatagactcgttgaatacatcagtgtagcgcg 182  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
25191 aaatttcaaagattacccgggcctgtcggccaaggctatagactcgttgaatacatcagtgtagcgcg 25258  T

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Target: scaffold0052; HSP #2
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 15 - 182
Target Start/End: Complemental strand, 30885 - 30718
Alignment:
15 caaagggcagggacgtagtcaacgcgagctgatgactcgcgcttactaggaattcctcgttgaagaccaacaattgcaatgatctatccccatcacgatg 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
30885 caaagggcagggacgtagtcaacgcgagctgatgactcgcgcttactaggaattcctcgttgaagaccaacaattgcaatgatctatccccatcacgatg 30786  T
115 aaatttcaaagattacccgggcctgtcggccaaggctatagactcgttgaatacatcagtgtagcgcg 182  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
30785 aaatttcaaagattacccgggcctgtcggccaaggctatagactcgttgaatacatcagtgtagcgcg 30718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052; HSP #3
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 15 - 182
Target Start/End: Original strand, 47473 - 47640
Alignment:
15 caaagggcagggacgtagtcaacgcgagctgatgactcgcgcttactaggaattcctcgttgaagaccaacaattgcaatgatctatccccatcacgatg 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
47473 caaagggcagggacgtagtcaacgcgagctgatgactcgcgcttactaggaattcctcgttgaagaccaacaattgcaatgatctatccccatcacgatg 47572  T
115 aaatttcaaagattacccgggcctgtcggccaaggctatagactcgttgaatacatcagtgtagcgcg 182  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
47573 aaatttcaaagattacccgggcctgtcggccaaggctatagactcgttgaatacatcagtgtagcgcg 47640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052; HSP #4
Raw Score: 164; E-Value: 7e-88
Query Start/End: Original strand, 15 - 182
Target Start/End: Original strand, 5921 - 6088
Alignment:
15 caaagggcagggacgtagtcaacgcgagctgatgactcgcgcttactaggaattcctcgttgaagaccaacaattgcaatgatctatccccatcacgatg 114  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
5921 caaagggcagggacgtagtcaacgcgtgctgatgactcgcgcttactaggaattcctcgttgaagaccaacaattgcaatgatctatccccatcacgatg 6020  T
115 aaatttcaaagattacccgggcctgtcggccaaggctatagactcgttgaatacatcagtgtagcgcg 182  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
6021 aaatttcaaagattacccgggcctgtcggccaaggctatagactcgttgaatacatcagtgtagcgcg 6088  T

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Target: scaffold0052; HSP #5
Raw Score: 164; E-Value: 7e-88
Query Start/End: Original strand, 15 - 182
Target Start/End: Original strand, 26953 - 27120
Alignment:
15 caaagggcagggacgtagtcaacgcgagctgatgactcgcgcttactaggaattcctcgttgaagaccaacaattgcaatgatctatccccatcacgatg 114  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
26953 caaagggcagggacgtagtcaacgcgagctgatgactcgcgcttactaggaattcctcgtcgaagaccaacaattgcaatgatctatccccatcacgatg 27052  T
115 aaatttcaaagattacccgggcctgtcggccaaggctatagactcgttgaatacatcagtgtagcgcg 182  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
27053 aaatttcaaagattacccgggcctgtcggccaaggctatagactcgttgaatacatcagtgtagcgcg 27120  T

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Target: scaffold0052; HSP #6
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 15 - 182
Target Start/End: Complemental strand, 35739 - 35572
Alignment:
15 caaagggcagggacgtagtcaacgcgagctgatgactcgcgcttactaggaattcctcgttgaagaccaacaattgcaatgatctatccccatcacgatg 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||    
35739 caaagggcagggacgtagtcaacgcgagctgatgactcgcgcttactaggaattcctcgttgaagaccaacaattgcaatgatctatcttcatcacgatg 35640  T
115 aaatttcaaagattacccgggcctgtcggccaaggctatagactcgttgaatacatcagtgtagcgcg 182  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
35639 aaatttcaaagattacccgggcctgtcggccaaggctatagactcgttgaatacatcagtgtagcgcg 35572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052; HSP #7
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 43 - 182
Target Start/End: Complemental strand, 64033 - 63894
Alignment:
43 ctgatgactcgcgcttactaggaattcctcgttgaagaccaacaattgcaatgatctatccccatcacgatgaaatttcaaagattacccgggcctgtcg 142  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
64033 ctgatgactcgcgcttactaggaattcctcattgaagaccaacaattgcaatgatctatccccatcacgatgaaatttcaaagattacccgggcctgtcg 63934  T
143 gccaaggctatagactcgttgaatacatcagtgtagcgcg 182  Q
    ||||||||||||||||||||||||||||||||||||||||    
63933 gccaaggctatagactcgttgaatacatcagtgtagcgcg 63894  T

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Target: scaffold0021 (Bit Score: 168; Significance: 3e-90; HSPs: 2)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 15 - 182
Target Start/End: Original strand, 45735 - 45902
Alignment:
15 caaagggcagggacgtagtcaacgcgagctgatgactcgcgcttactaggaattcctcgttgaagaccaacaattgcaatgatctatccccatcacgatg 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
45735 caaagggcagggacgtagtcaacgcgagctgatgactcgcgcttactaggaattcctcgttgaagaccaacaattgcaatgatctatccccatcacgatg 45834  T
115 aaatttcaaagattacccgggcctgtcggccaaggctatagactcgttgaatacatcagtgtagcgcg 182  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
45835 aaatttcaaagattacccgggcctgtcggccaaggctatagactcgttgaatacatcagtgtagcgcg 45902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 15 - 57
Target Start/End: Original strand, 62678 - 62720
Alignment:
15 caaagggcagggacgtagtcaacgcgagctgatgactcgcgct 57  Q
    |||||||||||||||||||||||||||||||||||||||||||    
62678 caaagggcagggacgtagtcaacgcgagctgatgactcgcgct 62720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0515 (Bit Score: 148; Significance: 3e-78; HSPs: 1)
Name: scaffold0515
Description:

Target: scaffold0515; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 15 - 182
Target Start/End: Complemental strand, 7821 - 7654
Alignment:
15 caaagggcagggacgtagtcaacgcgagctgatgactcgcgcttactaggaattcctcgttgaagaccaacaattgcaatgatctatccccatcacgatg 114  Q
    |||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||| ||||    
7821 caaagggcagggacgtggtcaacgtgagctgatgactcgcgcttactaggaattcctcgttgaagatcaacaattgcaatgatctatcaccatcatgatg 7722  T
115 aaatttcaaagattacccgggcctgtcggccaaggctatagactcgttgaatacatcagtgtagcgcg 182  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
7721 aaatttcaaagattacccgggcctgtcggccaaggctatagactcgttgaatacatcagtgtagcgcg 7654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0306 (Bit Score: 148; Significance: 3e-78; HSPs: 1)
Name: scaffold0306
Description:

Target: scaffold0306; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 15 - 182
Target Start/End: Complemental strand, 7831 - 7664
Alignment:
15 caaagggcagggacgtagtcaacgcgagctgatgactcgcgcttactaggaattcctcgttgaagaccaacaattgcaatgatctatccccatcacgatg 114  Q
    |||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||| ||||    
7831 caaagggcagggacgtggtcaacgtgagctgatgactcgcgcttactaggaattcctcgttgaagatcaacaattgcaatgatctatcaccatcatgatg 7732  T
115 aaatttcaaagattacccgggcctgtcggccaaggctatagactcgttgaatacatcagtgtagcgcg 182  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
7731 aaatttcaaagattacccgggcctgtcggccaaggctatagactcgttgaatacatcagtgtagcgcg 7664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0152 (Bit Score: 144; Significance: 6e-76; HSPs: 1)
Name: scaffold0152
Description:

Target: scaffold0152; HSP #1
Raw Score: 144; E-Value: 6e-76
Query Start/End: Original strand, 15 - 182
Target Start/End: Complemental strand, 25442 - 25275
Alignment:
15 caaagggcagggacgtagtcaacgcgagctgatgactcgcgcttactaggaattcctcgttgaagaccaacaattgcaatgatctatccccatcacgatg 114  Q
    |||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| |||||| ||||    
25442 caaagggcagggacgtagtcaacgtgagctgatgactcgcacttactaggaattcctcgttgaagatcaacaattgcaatgatctatcaccatcatgatg 25343  T
115 aaatttcaaagattacccgggcctgtcggccaaggctatagactcgttgaatacatcagtgtagcgcg 182  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
25342 aaatttcaaagattacccgggcctatcggccaaggctatagactcgttgaatacatcagtgtagcgcg 25275  T

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