View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17646_low_1 (Length: 436)
Name: NF17646_low_1
Description: NF17646
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17646_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 367; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 17 - 426
Target Start/End: Original strand, 40381523 - 40381929
Alignment:
| Q |
17 |
agcaagtaaaaaggacaaccctgcacagagctgatacaaaagctctctgtgtgaaacattaaaaattaaccaattataatgtggttttcaagatatgcaa |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||| |||||||||||||||| |
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| T |
40381523 |
agcaagtaaaaaggacaaccctgcacagagctgatacaaaagctctctgtg--aaacattaaaaattaatcaattataatgtgattttcaagatatgcaa |
40381620 |
T |
|
| Q |
117 |
aagtagtatcacaatcatatcatatatacttatttactgaatttggacttgtgaaacaacaagactaatttaattcccattaaaaaattgtatctatggt |
216 |
Q |
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| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40381621 |
a-gtagtatcacaatcatatcatatatacttatttactgaattcggacttgtgaaacaacaagactaatttaattcccattaaaaaattgtatctatggt |
40381719 |
T |
|
| Q |
217 |
ttggtttactgtcagttatgagcattgagaatcagacccttcaaaaatggtaacctcaatatctttaggacttattggtatatcattgtttgctgtattg |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40381720 |
ttggtttactgtcagttatgagcattgagaatcagacccttcaaaaatggtaacctcaatatctttaggacttattggtatatcattgtttgctgtattg |
40381819 |
T |
|
| Q |
317 |
tccaaattttgagtgttcaattggccaccactacttgtcttctgatgttggtcaaacatcatttgcaacttccttccttgttcctctattcgcaactgta |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||| |||||||||||||||||||| |
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| T |
40381820 |
tccaaattttgagtgttcaattggccaccactacttgtcttctgatgttggtcaaacatcatcttcaacttccttccttattcctctattcgcaactgta |
40381919 |
T |
|
| Q |
417 |
attttctctg |
426 |
Q |
| |
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|||||||||| |
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| T |
40381920 |
attttctctg |
40381929 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 229; Significance: 1e-126; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 92 - 422
Target Start/End: Original strand, 22812162 - 22812490
Alignment:
| Q |
92 |
ataatgtggttttcaagatatgcaaaagtagtatcacaatcatatcatatatactt--atttactgaatttggacttgtgaaacaacaagactaatttaa |
189 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||| |||| |||||||||||||||||||| |
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| T |
22812162 |
ataatgtggttttcaagatatgcaaaagtagtatcacactcatatcatatatacttttatttactgaatttggatttgtaaaacaacaagactaatttaa |
22812261 |
T |
|
| Q |
190 |
ttcccattaaaaaattgtatctatggtttggtttactgtcagttatgagcattgagaatcagacccttcaaaaatggtaacctcaatatctttaggactt |
289 |
Q |
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||||||||| |||||||||| |||||||||| |||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
22812262 |
ttcccattacaaaattgtat----ggtttggttttctgtcagttatgagtattgagaatgagacccttcaaaaatggtaacctcaatatctttaggacta |
22812357 |
T |
|
| Q |
290 |
attggtatatcattgtttgctgtattgtccaaattttgagtgttcaattggccaccactacttgtcttctgatgttggtcaaacatcatttgcaacttcc |
389 |
Q |
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|||||| |||||||||||| |||||||||||||||||||||||||||||||| | |||| |||||||||| ||||||||||||||||| | ||||| | |
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| T |
22812358 |
attggtgtatcattgtttggtgtattgtccaaattttgagtgttcaattggcaagtactatttgtcttctgttgttggtcaaacatcatcttcaactgct |
22812457 |
T |
|
| Q |
390 |
ttccttgttcctctattcgcaactgtaattttc |
422 |
Q |
| |
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||||||||||||||||||||||||||||||||| |
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| T |
22812458 |
ttccttgttcctctattcgcaactgtaattttc |
22812490 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 253 - 375
Target Start/End: Original strand, 22809496 - 22809618
Alignment:
| Q |
253 |
cccttcaaaaatggtaacctcaatatctttaggacttattggtatatcattgtttgctgtattgtccaaattttgagtgttcaattggccaccactactt |
352 |
Q |
| |
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|||||||||||| | || |||| |||||||||| || ||||| |||||||||||| |||| |||||||||| ||||||||| |||||||| ||||||| |
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| T |
22809496 |
cccttcaaaaattgaaatctcagtatctttaggcctgtttggtttatcattgtttgatgtaatgtccaaattccgagtgttcatttggccactactactt |
22809595 |
T |
|
| Q |
353 |
gtcttctgatgttggtcaaacat |
375 |
Q |
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||||||| |||||||||||||| |
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| T |
22809596 |
ctcttctgctgttggtcaaacat |
22809618 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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