View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17646_low_2 (Length: 320)
Name: NF17646_low_2
Description: NF17646
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17646_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 272; Significance: 1e-152; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 11 - 306
Target Start/End: Complemental strand, 8300022 - 8299727
Alignment:
| Q |
11 |
agaatatagtgtactgaaaatatgactaaaacaatatgaatgtgtagtgcagctccttcaagacgttaggttaggaaattgaatatttaattgaaaattg |
110 |
Q |
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| T |
8300022 |
agaaaatagtgtactgaaaatatgactaaaacaatatgaatgtgtagtgcagctccttcaagacgttaggttaggaaattgaatatttaattgaaaattg |
8299923 |
T |
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| Q |
111 |
atttttcctatgccttgtatagatattatttgaattgtttttaggtagttatctaggattaggattgattgtactatataatatgaaaatggtaacttta |
210 |
Q |
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| T |
8299922 |
attttgcatatgccttgtatagatattatttgaatggtttttaggtagttatctaggattagaattgaatgtactatataatatgaaaatggtaacttta |
8299823 |
T |
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| Q |
211 |
atattgatactgattatgtattgttttccttccgttgtctttcatttgcaggtagatagatatagatcagcatcattgatcatgtaagtgtgtggt |
306 |
Q |
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| T |
8299822 |
atattgatactgattatgtattgttttccttccgttgtctttcatttgcaggtagatagatatagatcagcatcattgatcatgtaagtgtgtggt |
8299727 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 119 - 289
Target Start/End: Complemental strand, 8309391 - 8309215
Alignment:
| Q |
119 |
tatgccttgtatagatattatttgaattgtttttaggtagttatctaggattaggattgattgtactatataatatgaaaatggtaact------ttaat |
212 |
Q |
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| T |
8309391 |
tatgtcttgtatagatattacttgaatggtttttatgtagctatctaggaccaggattgattgtactatataatatgaaaaaggtaactttgttattaat |
8309292 |
T |
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| Q |
213 |
attgatactgattatgtattgttttccttccgttgtctttcatttgcaggtagatagatatagatcagcatcattga |
289 |
Q |
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| T |
8309291 |
attcatattgattatatattaatttgcttccgttttctttcatttgcaggaagatagatataaattagcatcattga |
8309215 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 16 - 115
Target Start/End: Complemental strand, 8309522 - 8309425
Alignment:
| Q |
16 |
atagtgtactgaaaatatgactaaaacaatatgaatgtgtagtgcagctccttcaagacgttaggttaggaaattgaatatttaattgaaaattgatttt |
115 |
Q |
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| T |
8309522 |
atagtgtactgaaaatatgactaaaacaatatgaatgtgtagtgcagctccttca--gccttaggttaggaaattgaatatttaattgaaaattgatttt |
8309425 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 137 - 246
Target Start/End: Original strand, 21120775 - 21120882
Alignment:
| Q |
137 |
tatttgaattgtttttaggtagttatctaggattaggattgattgtactatataatatgaaaatggtaactttaatattgatactgattatgtattgttt |
236 |
Q |
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| T |
21120775 |
tatttgaagggtttttatgcagctatctagaattaggattgattctactata--atatgaaaatggtaactttgttattaatattgattttgtattgatt |
21120872 |
T |
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| Q |
237 |
tccttccgtt |
246 |
Q |
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| T |
21120873 |
tcctttcgtt |
21120882 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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