View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17647_high_10 (Length: 427)
Name: NF17647_high_10
Description: NF17647
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17647_high_10 |
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Alignment Details
Target: chr6 (Bit Score: 329; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 19 - 409
Target Start/End: Original strand, 29461400 - 29461787
Alignment:
| Q |
19 |
tattgaaccttatagcgatggtattcatctatggctacgtctccattacttctgtcttttatcttttctgtgtcaaacaacattggttacattaattaac |
118 |
Q |
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| T |
29461400 |
tattgaaccttatagcgatggtattcatctatggctacgtctccattacttctgtcttttatcttttctgtgtcaaacaacattggttacattaattaac |
29461499 |
T |
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| Q |
119 |
attgcattagttaccttaatgcacaagtgaaagaattactat--taatttacctaaataaaaattggttacaatcaacaattcatttttacacacgtaac |
216 |
Q |
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| T |
29461500 |
attgcattagttaccttaatgcacaagtgaaagaattactatattaatttacctaaataaaaattggttacaatcaacatttcatttttacacacgtaac |
29461599 |
T |
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| Q |
217 |
attaacaacatatattaagatttttctcttnnnnnnncatagtaaaactttcttctttatttcctttctatttttgacgaaattctaacacttatcaatt |
316 |
Q |
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| T |
29461600 |
attaaca-----tattaagacttttctcttaaaaaaacatagtaaaactttcttctttatttcctttctatttttgacgaaattctaacacttatcaatt |
29461694 |
T |
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| Q |
317 |
aagttaataaattccaaataaagttttggcataattttacctctcatcaaacaaatatttaatcatgatttaacttacattcattccgtattc |
409 |
Q |
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| T |
29461695 |
aagttaataaattccaaataaagttttggcataattttacctctcatcaaacaaatatttaatcatgttttaacttacattcattccgtattc |
29461787 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 19 - 80
Target Start/End: Complemental strand, 29422080 - 29422019
Alignment:
| Q |
19 |
tattgaaccttatagcgatggtattcatctatggctacgtctccattacttctgtcttttat |
80 |
Q |
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|||||||||||||| |||||||||||||| | ||||| ||||||||||||||||| ||||| |
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| T |
29422080 |
tattgaaccttataacgatggtattcatcaagggctatatctccattacttctgtcctttat |
29422019 |
T |
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