View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17647_high_20 (Length: 345)
Name: NF17647_high_20
Description: NF17647
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17647_high_20 |
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Alignment Details
Target: chr4 (Bit Score: 308; Significance: 1e-173; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 1 - 312
Target Start/End: Original strand, 54153936 - 54154247
Alignment:
| Q |
1 |
aaaatcacattaaaaaatggatttggatttcctgtttctaattttaatttataggtgactgagaaacccataagaaaaaagagagaagaaacccatggag |
100 |
Q |
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| T |
54153936 |
aaaatcacattaaaaaatggatttggatttcctgtttctaattttaatttataggtgactgagaaacccataagaaaaaagagagaagaaacccatggag |
54154035 |
T |
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| Q |
101 |
atgagaatccgacatttgattaatgcctaatttgatttttgattcctttattcaacaatgataatcgaaaagaatcgcaaatccaatttgcctagtcgga |
200 |
Q |
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| T |
54154036 |
atgagaatccgacatttgattaatgcctaatttgatttttgattccttttttcaacaatgataatcgaaaagaatcgcaaatccaatttgcctagtcgga |
54154135 |
T |
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| Q |
201 |
aaaggagtagattcaataaatcggacgaagaagagtcaaggttgactcataaacaaaagaagaaaacaaacagaaattatcctttgaatctcctcacctg |
300 |
Q |
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| T |
54154136 |
aaaggagtagattcaataaatcggacgaagaagagtcaaggttgactcataaacaaaagaagaaaacaaacagaaattatcctttgaatctcctcacctg |
54154235 |
T |
|
| Q |
301 |
tccaattcccac |
312 |
Q |
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|||||||||||| |
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| T |
54154236 |
tccaattcccac |
54154247 |
T |
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