View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17647_high_21 (Length: 342)
Name: NF17647_high_21
Description: NF17647
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17647_high_21 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 1 - 342
Target Start/End: Original strand, 42658116 - 42658456
Alignment:
| Q |
1 |
tcaaaagcacacaacaccataagaaatacataatgtaacaacattggtgcactaaagaaagagnnnnnnnnnntatccaagatgccccctgatatacttc |
100 |
Q |
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| T |
42658116 |
tcaaaagcacacaacaccataagaaatacataatgtaacaacattggtgcactaaagaaagagaaaaaaaaa-tatccaagatgccccctgatatacttc |
42658214 |
T |
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| Q |
101 |
atattcgtcctcttgttcaattttcacctccacacacaactcaagtaaaagaaaatcaaccttctatattttacaaatatcaaaaagtaacaaaaaggat |
200 |
Q |
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| T |
42658215 |
atattcgtcctcttgttcaattttcacctccacacacaactcaagtaaaagaaaatcaaccttctatatttcacaaatatcaaaaagtaacaaaaaggat |
42658314 |
T |
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| Q |
201 |
gaatctcacaaaaaagaaactcatccctatccttgttttgttcctctcaaccatatcaatctttagaattcttagtctcaatattaaaactacttctaca |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42658315 |
gaatctcacaaaaaagaaactcatccctatccttgttttgttcctctcaaccatatcaatctttagaattcttagtctcaatattaaaactacttctaca |
42658414 |
T |
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| Q |
301 |
cctttttccacctacaacaaaattattgcatcagatacacat |
342 |
Q |
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||||||||||||||||||||||||||||||||| |||||||| |
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| T |
42658415 |
cctttttccacctacaacaaaattattgcatcacatacacat |
42658456 |
T |
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