View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17647_high_24 (Length: 324)

Name: NF17647_high_24

Description: NF17647

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF17647_high_24

[»] chr7 (2 HSPs)

Target: chr7 (Bit Score: 273; Significance: 1e-152; HSPs: 2)

Name: chr7

Description:

Target: chr7; HSP #1

Raw Score: 273; E-Value: 1e-152

Query Start/End: Original strand, 1 - 273

Target Start/End: Original strand, 43475452 - 43475724

Alignment:

Q	1	ccaaaggaagcaatgaagaatgcctacatccacatgtaaacaattctgacatggagcaacaatcagagacagatcatcctgcaaatgatcatgtacctcc	100	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	43475452	ccaaaggaagcaatgaagaatgcctacatccacatgtaaacaattctgacatggagcaacaatcagagacagatcatcctgcaaatgatcatgtacctcc	43475551	T

Q	101	ttttagttctactacagttgaatttgcatcatgtgaggttactgttggagtttagaatcatatcataactatgttagagtagggatctatgttattaaat	200	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	43475552	ttttagttctactacagttgaatttgcatcatgtgaggttactgttggagtttagaatcatatcataactatgttagagtagggatctatgttattaaat	43475651	T

Q	201	aagtatttagtagctattattgttgttgtgaatatagaatttggtttcatcataaacgtgtattgcaagtaag	273	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	43475652	aagtatttagtagctattattgttgttgtgaatatagaatttggtttcatcataaacgtgtattgcaagtaag	43475724	T

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Target: chr7; HSP #2

Raw Score: 30; E-Value: 0.0000001

Query Start/End: Original strand, 295 - 324

Target Start/End: Original strand, 43475764 - 43475793

Alignment:

Q	295	gagttgcccttttgtgatatccgtttaaaa	324	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	43475764	gagttgcccttttgtgatatccgtttaaaa	43475793	T

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