View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17647_high_31 (Length: 290)
Name: NF17647_high_31
Description: NF17647
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17647_high_31 |
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| [»] scaffold0565 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 44 - 276
Target Start/End: Complemental strand, 36362742 - 36362508
Alignment:
| Q |
44 |
taacaaacacaagattaaagtaggacatattcttgcatataatattgattctttcacattttgtaaatgcacagtaaacnnnnnnn--actgctgtctaa |
141 |
Q |
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| T |
36362742 |
taacaaacacaagattaaagtaggacatattcttgcatataatattgattctttcacattttgtaaatgcacagtaatttttttttttactgttgtctaa |
36362643 |
T |
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| Q |
142 |
ctaactgtggaaatttaacagctgagctattgggattcgatgattatattccaccctatgcatctgctagtgatgatgccatactcaaaggagtcaatta |
241 |
Q |
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| T |
36362642 |
ctaactgtggaaatttaacagctgagctattgggattcgatgattatattccaccctatgcatctgctagtgatgatgccatactcaaaggagtcaatta |
36362543 |
T |
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| Q |
242 |
tgcttctgcagcagctggaattagagaggaaactg |
276 |
Q |
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| T |
36362542 |
tgcttctgcagcagctggaattagagaggaaactg |
36362508 |
T |
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Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 222 - 276
Target Start/End: Original strand, 7614117 - 7614171
Alignment:
| Q |
222 |
atactcaaaggagtcaattatgcttctgcagcagctggaattagagaggaaactg |
276 |
Q |
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| T |
7614117 |
atactccaaggagtcaattatgcttctgctgctgctggaattagagaagaaactg |
7614171 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0565 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0565
Description:
Target: scaffold0565; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 222 - 274
Target Start/End: Complemental strand, 4730 - 4678
Alignment:
| Q |
222 |
atactcaaaggagtcaattatgcttctgcagcagctggaattagagaggaaac |
274 |
Q |
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| T |
4730 |
atactcagaggagtcaattatgcttcagcagctgctggaatcagagaagaaac |
4678 |
T |
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