View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17647_high_4 (Length: 673)

Name: NF17647_high_4
Description: NF17647
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17647_high_4
NF17647_high_4
[»] chr6 (34 HSPs)
chr6 (274-421)||(29688717-29688865)
chr6 (270-400)||(28487096-28487229)
chr6 (549-656)||(29718264-29718371)
chr6 (270-400)||(29799509-29799642)
chr6 (549-656)||(29689084-29689191)
chr6 (16-108)||(29709668-29709760)
chr6 (549-656)||(29799785-29799893)
chr6 (549-656)||(28487372-28487481)
chr6 (549-656)||(29711646-29711748)
chr6 (590-656)||(29767101-29767167)
chr6 (15-108)||(28502162-28502255)
chr6 (15-108)||(29716558-29716650)
chr6 (15-108)||(29814568-29814661)
chr6 (270-391)||(29815992-29816116)
chr6 (587-656)||(29662668-29662737)
chr6 (283-385)||(28906807-28906908)
chr6 (586-656)||(29755593-29755663)
chr6 (19-91)||(28502072-28502143)
chr6 (19-91)||(29814478-29814549)
chr6 (549-659)||(29704848-29704963)
chr6 (473-544)||(28487276-28487347)
chr6 (473-544)||(29799689-29799760)
chr6 (205-238)||(28486059-28486092)
chr6 (270-374)||(28503584-28503691)
chr6 (587-656)||(29472073-29472142)
chr6 (205-238)||(29798471-29798504)
chr6 (50-94)||(29688111-29688155)
chr6 (105-159)||(28485969-28486026)
chr6 (23-94)||(28501989-28502060)
chr6 (105-159)||(29798381-29798438)
chr6 (23-94)||(29814395-29814466)
chr6 (107-143)||(28502284-28502320)
chr6 (612-656)||(29671255-29671299)
chr6 (107-143)||(29814690-29814726)
[»] scaffold0007 (2 HSPs)
scaffold0007 (549-652)||(75261-75364)
scaffold0007 (187-270)||(45659-45742)
[»] chr8 (4 HSPs)
chr8 (549-656)||(12592520-12592627)
chr8 (15-108)||(12593820-12593914)
chr8 (105-174)||(12593724-12593793)
chr8 (205-270)||(12593639-12593703)
[»] chr3 (2 HSPs)
chr3 (549-656)||(618987-619094)
chr3 (20-107)||(619967-620052)
[»] scaffold0012 (2 HSPs)
scaffold0012 (341-412)||(199107-199178)
scaffold0012 (614-656)||(208626-208668)


Alignment Details
Target: chr6 (Bit Score: 77; Significance: 2e-35; HSPs: 34)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 274 - 421
Target Start/End: Original strand, 29688717 - 29688865
Alignment:
Q  274 tcttctctggagtgggacaagcaattgatttatcaattgtttggagaatcgtct-cgcactcgaaatctgaagaatctttcacttattcatcacatgctt 372  Q
    ||||||||||||||||||| |||||| ||||||||| ||| ||||||||| ||| | || | ||||||||||| |||||||||| ||||||||||| |      
T  29688717 tcttctctggagtgggacatgcaattcatttatcaactgtgtggagaatcttcttctcattagaaatctgaagcatctttcactgattcatcacatacca 29688816  T
Q  373 ttggatctattcttcagcataatagaaaaagaagatagtcgaacacatt 421  Q
    ||||||| |||||||||| ||||||||||||||||||||||||| ||||    
T  29688817 ttggatccattcttcagcctaatagaaaaagaagatagtcgaactcatt 29688865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 270 - 400
Target Start/End: Original strand, 28487096 - 28487229
Alignment:
Q  270 gtcttcttctctggagtgggacaagcaattgatttatcaattgtttggagaatcgtct---cgcactcgaaatctgaagaatctttcacttattcatcac 366  Q
    |||||||||| |||||| ||||| |||||||||||||||| ||| ||||||||| |||   |  ||| |||||||||||||||||||||| |||||||||    
T  28487096 gtcttcttctttggagttggacatgcaattgatttatcaactgtgtggagaatcttcttctcagacttgaaatctgaagaatctttcactgattcatcac 28487195  T
Q  367 atgcttttggatctattcttcagcataatagaaa 400  Q
    ||||||||||||| ||||||||||||||||||||    
T  28487196 atgcttttggatccattcttcagcataatagaaa 28487229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 549 - 656
Target Start/End: Original strand, 29718264 - 29718371
Alignment:
Q  549 atgaatgatatacttacttcaacatcccgagtgtgacacaatgttagcatcattttctgggtcggtgaatcgaatatccttcatgctccttttctctttc 648  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||  |||||| ||||||||||||||||| ||||||  |||| ||||||    
T  29718264 atgaatgatatacttacttcaacatcccgagtgtaacacaatgttagcatcattcgctgggttggtgaatcgaatatcctccatgctatttttttctttc 29718363  T
Q  649 aatacatg 656  Q
    ||||||||    
T  29718364 aatacatg 29718371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 270 - 400
Target Start/End: Original strand, 29799509 - 29799642
Alignment:
Q  270 gtcttcttctctggagtgggacaagcaattgatttatcaattgtttggagaatcgtct---cgcactcgaaatctgaagaatctttcacttattcatcac 366  Q
    |||||||||| |||||| ||||| |||||||||||||||| ||| ||||||||| |||   |  ||| |||||||||||||||||||||| |||||||||    
T  29799509 gtcttcttctttggagttggacatgcaattgatttatcaactgtgtggagaatcttcttctcagacttgaaatctgaagaatctttcactgattcatcac 29799608  T
Q  367 atgcttttggatctattcttcagcataatagaaa 400  Q
    ||||||||||||| ||||||||||||||||||||    
T  29799609 atgcttttggatccattcttcagcataatagaaa 29799642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 549 - 656
Target Start/End: Original strand, 29689084 - 29689191
Alignment:
Q  549 atgaatgatatacttacttcaacatcccgagtgtgacacaatgttagcatcattttctgggtcggtgaatcgaatatccttcatgctccttttctctttc 648  Q
    |||||||||||||||||||||| ||||||||||| ||||||||||||||||||| ||||| | |||||||| ||||||||||||| | || |||||||||    
T  29689084 atgaatgatatacttacttcaaaatcccgagtgtaacacaatgttagcatcattctctggattggtgaatctaatatccttcatgttactcttctctttc 29689183  T
Q  649 aatacatg 656  Q
    ||||||||    
T  29689184 aatacatg 29689191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 16 - 108
Target Start/End: Original strand, 29709668 - 29709760
Alignment:
Q  16 atatattttcaactaagtatcatattataccttattattatcattaatacattttcaactaattataacatgcttacatctacctatcatatg 108  Q
    |||||||||||||||| |||||||| ||||||||||| ||||||||| ||||||| || ||||||||||||| ||||||||||||| ||||||    
T  29709668 atatattttcaactaaatatcatataataccttattactatcattaaaacatttttaattaattataacatgtttacatctacctaccatatg 29709760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 549 - 656
Target Start/End: Original strand, 29799785 - 29799893
Alignment:
Q  549 atgaatgatatacttacttcaacatcccgagtgtgacacaatgttagcatc-attttctgggtcggtgaatcgaatatccttcatgctccttttctcttt 647  Q
    |||||||||||||||||| ||||||||||||||| |||||||||||||||| | |  |||||||| |||||||||||||||||||| | |||||  ||||    
T  29799785 atgaatgatatacttactacaacatcccgagtgtaacacaatgttagcatcaactccctgggtcgctgaatcgaatatccttcatgttacttttagcttt 29799884  T
Q  648 caatacatg 656  Q
    |||||||||    
T  29799885 caatacatg 29799893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 549 - 656
Target Start/End: Original strand, 28487372 - 28487481
Alignment:
Q  549 atgaatgatatacttacttcaacatcccgagtgtgacacaatgttagcatc-attttctgggtcggtgaatcgaatatccttcatgctcctttt-ctctt 646  Q
    |||||||||||||||||| ||||||||||||||| |||||||||||||||| | |  |||||||| |||||||||||||||||||| | |||||  ||||    
T  28487372 atgaatgatatacttactacaacatcccgagtgtaacacaatgttagcatcaactccctgggtcgctgaatcgaatatccttcatgttacttttagtctt 28487471  T
Q  647 tcaatacatg 656  Q
    ||||||||||    
T  28487472 tcaatacatg 28487481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 549 - 656
Target Start/End: Original strand, 29711646 - 29711748
Alignment:
Q  549 atgaatgatatacttacttcaacatcccgagtgtgacacaatgttagcatcattttctgggtcggtgaatcgaatatccttcatgctccttttctctttc 648  Q
    |||||||||||||||||||||||||||||||||| |||||||||| |||||||| |||     ||||||| |||| || |||||| | ||||||||||||    
T  29711646 atgaatgatatacttacttcaacatcccgagtgtaacacaatgttggcatcattctct-----ggtgaattgaatgtctttcatgttacttttctctttc 29711740  T
Q  649 aatacatg 656  Q
    ||||||||    
T  29711741 aatacatg 29711748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 590 - 656
Target Start/End: Original strand, 29767101 - 29767167
Alignment:
Q  590 tgttagcatcattttctgggtcggtgaatcgaatatccttcatgctccttttctctttcaatacatg 656  Q
    ||||||||||||| ||||||| ||||||||||||||| |||||||| ||||||||||||||||||||    
T  29767101 tgttagcatcattctctgggttggtgaatcgaatatctttcatgctacttttctctttcaatacatg 29767167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 15 - 108
Target Start/End: Original strand, 28502162 - 28502255
Alignment:
Q  15 aatatattttcaactaagtatcatattataccttattattatcattaatacattttcaactaattataacatgcttacatctacctatcatatg 108  Q
    |||||||||||||| || |||||||  | ||||||||||||| |||||||||| |||||||| || |||||||||| |||||||||| ||||||    
T  28502162 aatatattttcaacaaaatatcatacaacaccttattattatgattaatacatattcaactagttctaacatgcttccatctacctaccatatg 28502255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 15 - 108
Target Start/End: Original strand, 29716558 - 29716650
Alignment:
Q  15 aatatattttcaactaagtatcatattataccttattattatcattaatacattttcaactaattataacatgcttacatctacctatcatatg 108  Q
    |||||||||||||| || |||||||  | ||||||||||||| ||||||||||||||||||| |||||||| |||| |||||||||| ||||||    
T  29716558 aatatattttcaacaaa-tatcatacaacaccttattattatgattaatacattttcaactagttataacaagcttccatctacctaccatatg 29716650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 15 - 108
Target Start/End: Original strand, 29814568 - 29814661
Alignment:
Q  15 aatatattttcaactaagtatcatattataccttattattatcattaatacattttcaactaattataacatgcttacatctacctatcatatg 108  Q
    |||||||||||||| || |||||||  | ||||||||||||| |||||||||| |||||||| || |||||||||| |||||||||| ||||||    
T  29814568 aatatattttcaacaaaatatcatacaacaccttattattatgattaatacatattcaactagttctaacatgcttccatctacctaccatatg 29814661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 270 - 391
Target Start/End: Original strand, 29815992 - 29816116
Alignment:
Q  270 gtcttcttctctggagtgggacaagcaattgatttatcaattgtttggagaatcgtct---cgcactcgaaatctgaagaatctttcacttattcatcac 366  Q
    |||||||||||||| ||||| || |||||||||||||||| ||  ||||||||| |||   |  ||  |||||||||||||| ||||||| ||| |||||    
T  29815992 gtcttcttctctggggtggggcatgcaattgatttatcaactgagtggagaatcttcttctcagacatgaaatctgaagaatttttcactgatttatcac 29816091  T
Q  367 atgcttttggatctattcttcagca 391  Q
    ||| ||||||||| |||||||||||    
T  29816092 atggttttggatccattcttcagca 29816116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 587 - 656
Target Start/End: Original strand, 29662668 - 29662737
Alignment:
Q  587 caatgttagcatcattttctgggtcggtgaatcgaatatccttcatgctccttttctctttcaatacatg 656  Q
    |||| ||||||||||| ||||||| ||||||||||||||| |||||| | ||||||||||||||||||||    
T  29662668 caatattagcatcattctctgggttggtgaatcgaatatcattcatgttacttttctctttcaatacatg 29662737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 283 - 385
Target Start/End: Complemental strand, 28906908 - 28906807
Alignment:
Q  283 gagtgggacaagcaattgatttatcaattgtttggagaatcgtctcgcactcgaaatctgaagaatctttcacttattcatcacatgcttttggatctat 382  Q
    |||||||||| |||||||||||||||| |  ||| | |||| |||| |||| ||||||||||| || ||||||| ||||||||||||||||| |||| ||    
T  28906908 gagtgggacatgcaattgatttatcaacttcttgaaaaatcttctcacacttgaaatctgaagcat-tttcactgattcatcacatgcttttcgatccat 28906810  T
Q  383 tct 385  Q
    |||    
T  28906809 tct 28906807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 586 - 656
Target Start/End: Original strand, 29755593 - 29755663
Alignment:
Q  586 acaatgttagcatcattttctgggtcggtgaatcgaatatccttcatgctccttttctctttcaatacatg 656  Q
    ||||||||||||||||| ||||| | |||||||||||||||||||| | |  |||||||||||||||||||    
T  29755593 acaatgttagcatcattctctggattggtgaatcgaatatccttcaagttaattttctctttcaatacatg 29755663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 19 - 91
Target Start/End: Original strand, 28502072 - 28502143
Alignment:
Q  19 tattttcaactaagtatcatattataccttattattatcattaatacattttcaactaattataacatgctta 91  Q
    ||||||||||||| |||||||  | ||||||||||||||||||||| ||||||||| || |||||||||||||    
T  28502072 tattttcaactaaatatcatacaa-accttattattatcattaataaattttcaaccaagtataacatgctta 28502143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 19 - 91
Target Start/End: Original strand, 29814478 - 29814549
Alignment:
Q  19 tattttcaactaagtatcatattataccttattattatcattaatacattttcaactaattataacatgctta 91  Q
    ||||||||||||| |||||||  | ||||||||||||||||||||| ||||||||| || |||||||||||||    
T  29814478 tattttcaactaaatatcatacaa-accttattattatcattaataaattttcaaccaagtataacatgctta 29814549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 549 - 659
Target Start/End: Original strand, 29704848 - 29704963
Alignment:
Q  549 atgaatgatatacttacttcaacatcccgagtgtgacacaatg-ttagcatc----attttctgggtcggtgaatcgaatatccttcatgctccttttct 643  Q
    ||||||||||||||||||||||||||  |  ||| |||||||| ||||||||    |||||||||||   |||||| ||||||||||||| | |||||||    
T  29704848 atgaatgatatacttacttcaacatcttggctgtaacacaatggttagcatcgttaattttctgggttactgaatcaaatatccttcatgttacttttct 29704947  T
Q  644 ctttcaatacatgtga 659  Q
    |||||| |||| ||||    
T  29704948 ctttcagtacacgtga 29704963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 473 - 544
Target Start/End: Original strand, 28487276 - 28487347
Alignment:
Q  473 gctctctagtgatagtattggagggcttttaacaattattaaaactacgcaaaaagtcaatatttctgcata 544  Q
    ||||||||||||||  || ||||||||||| ||||||| ||||||||  |||||| | ||||||||||||||    
T  28487276 gctctctagtgatatgataggagggcttttcacaattaataaaactagtcaaaaatttaatatttctgcata 28487347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 473 - 544
Target Start/End: Original strand, 29799689 - 29799760
Alignment:
Q  473 gctctctagtgatagtattggagggcttttaacaattattaaaactacgcaaaaagtcaatatttctgcata 544  Q
    ||||||||||||||  || ||||||||||| ||||||| ||||||||  |||||| | ||||||||||||||    
T  29799689 gctctctagtgatatgataggagggcttttcacaattaataaaactagtcaaaaatttaatatttctgcata 29799760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 205 - 238
Target Start/End: Original strand, 28486059 - 28486092
Alignment:
Q  205 cattggactttgtcagatgtataactcagacaca 238  Q
    ||||||||||||||||||||||||||||||||||    
T  28486059 cattggactttgtcagatgtataactcagacaca 28486092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 270 - 374
Target Start/End: Original strand, 28503584 - 28503691
Alignment:
Q  270 gtcttcttctctggagtgggacaagcaattgatttatcaattgtttggagaa---tcgtctcgcactcgaaatctgaagaatctttcacttattcatcac 366  Q
    |||||||||||||| ||||| || |||||||||||||||| ||  |||||||   || ||||  ||  |||||||||||||| ||||||| ||| |||||    
T  28503584 gtcttcttctctggggtggggcatgcaattgatttatcaactgagtggagaatcttcttctcagacatgaaatctgaagaatttttcactgatttatcac 28503683  T
Q  367 atgctttt 374  Q
    ||| ||||    
T  28503684 atggtttt 28503691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 587 - 656
Target Start/End: Complemental strand, 29472142 - 29472073
Alignment:
Q  587 caatgttagcatcattttctgggtcggtgaatcgaatatccttcatgctccttttctctttcaatacatg 656  Q
    |||| ||| |||| || ||||||| ||||||| |||||||||||||| | ||||||| ||||||||||||    
T  29472142 caatattatcatctttatctgggttggtgaattgaatatccttcatgttacttttctttttcaatacatg 29472073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 205 - 238
Target Start/End: Original strand, 29798471 - 29798504
Alignment:
Q  205 cattggactttgtcagatgtataactcagacaca 238  Q
    ||||||||||||||||||||||||||||||||||    
T  29798471 cattggactttgtcagatgtataactcagacaca 29798504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 50 - 94
Target Start/End: Original strand, 29688111 - 29688155
Alignment:
Q  50 ttattatcattaatacattttcaactaattataacatgcttacat 94  Q
    ||||||||||||||||||||| |||||| |||||||| |||||||    
T  29688111 ttattatcattaatacatttttaactaagtataacatacttacat 29688155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 105 - 159
Target Start/End: Original strand, 28485969 - 28486026
Alignment:
Q  105 tatgcagagaatgataacctaaatgccaccacaatag---taatcttgaattccgcaa 159  Q
    |||| ||||||||| |||||||||||||||||| |||   ||||||||||||||||||    
T  28485969 tatgtagagaatgaaaacctaaatgccaccacagtagtaataatcttgaattccgcaa 28486026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 94
Target Start/End: Original strand, 28501989 - 28502060
Alignment:
Q  23 ttcaactaagtatcatattataccttattattatcattaatacattttcaactaattataacatgcttacat 94  Q
    ||||||||| | |||||| |||  || |||||||||| |||||||||||||| || |||||||| |||||||    
T  28501989 ttcaactaaatctcatataataattttttattatcatcaatacattttcaaccaagtataacattcttacat 28502060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 105 - 159
Target Start/End: Original strand, 29798381 - 29798438
Alignment:
Q  105 tatgcagagaatgataacctaaatgccaccacaatag---taatcttgaattccgcaa 159  Q
    |||| ||||||||| |||||||||||||||||| |||   ||||||||||||||||||    
T  29798381 tatgtagagaatgaaaacctaaatgccaccacagtagtaataatcttgaattccgcaa 29798438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 94
Target Start/End: Original strand, 29814395 - 29814466
Alignment:
Q  23 ttcaactaagtatcatattataccttattattatcattaatacattttcaactaattataacatgcttacat 94  Q
    ||||||||| | |||||| |||  || |||||||||| |||||||||||||| || |||||||| |||||||    
T  29814395 ttcaactaaatctcatataataattttttattatcatcaatacattttcaaccaagtataacattcttacat 29814466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 107 - 143
Target Start/End: Original strand, 28502284 - 28502320
Alignment:
Q  107 tgcagagaatgataacctaaatgccaccacaatagta 143  Q
    |||||||||||| ||||||||||||||||||| ||||    
T  28502284 tgcagagaatgaaaacctaaatgccaccacaacagta 28502320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 612 - 656
Target Start/End: Original strand, 29671255 - 29671299
Alignment:
Q  612 ggtgaatcgaatatccttcatgctccttttctctttcaatacatg 656  Q
    |||||||| ||||||||||||| | |||||||||||| |||||||    
T  29671255 ggtgaatctaatatccttcatgttacttttctctttcgatacatg 29671299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 107 - 143
Target Start/End: Original strand, 29814690 - 29814726
Alignment:
Q  107 tgcagagaatgataacctaaatgccaccacaatagta 143  Q
    |||||||||||| ||||||||||||||||||| ||||    
T  29814690 tgcagagaatgaaaacctaaatgccaccacaacagta 29814726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 72; Significance: 2e-32; HSPs: 2)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 549 - 652
Target Start/End: Complemental strand, 75364 - 75261
Alignment:
Q  549 atgaatgatatacttacttcaacatcccgagtgtgacacaatgttagcatcattttctgggtcggtgaatcgaatatccttcatgctccttttctctttc 648  Q
    ||||||||||| ||||||||||||||||||| || ||||||||||||||| | | ||||||| |||||||||||||||||||||||| ||||||||||||    
T  75364 atgaatgatatgcttacttcaacatcccgagcgtaacacaatgttagcattagtctctgggttggtgaatcgaatatccttcatgctacttttctctttc 75265  T
Q  649 aata 652  Q
    ||||    
T  75264 aata 75261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007; HSP #2
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 187 - 270
Target Start/End: Complemental strand, 45742 - 45659
Alignment:
Q  187 acagtattacattgatttcattggactttgtcagatgtataactcagacacatccattgaagttccagaactcactcagattgg 270  Q
    ||||||||||||||||| ||||||||||||| |||||||||||||||||||| ||| |||||||| |||| ||||| |||||||    
T  45742 acagtattacattgattacattggactttgtgagatgtataactcagacacagccaatgaagttctagaaatcactaagattgg 45659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 60; Significance: 3e-25; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 549 - 656
Target Start/End: Complemental strand, 12592627 - 12592520
Alignment:
Q  549 atgaatgatatacttacttcaacatcccgagtgtgacacaatgttagcatcattttctgggtcggtgaatcgaatatccttcatgctccttttctctttc 648  Q
    ||||||||||||||||||| ||||| |||||||| ||||||||||||||||| |  |||||| ||||||||||||||||| |||| |  |||| ||||||    
T  12592627 atgaatgatatacttactttaacattccgagtgtaacacaatgttagcatcactcgctgggttggtgaatcgaatatcctccatgttgtttttatctttc 12592528  T
Q  649 aatacatg 656  Q
    ||||||||    
T  12592527 aatacatg 12592520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 15 - 108
Target Start/End: Complemental strand, 12593914 - 12593820
Alignment:
Q  15 aatatattttcaactaagtatcatattataccttattattatcattaatacattttcaactaa-ttataacatgcttacatctacctatcatatg 108  Q
    ||||||||||||||||| |||||||  ||||||| |||||| |||  ||||||||||| |||| ||||||||||||| |||||||||| ||||||    
T  12593914 aatatattttcaactaaatatcatacaataccttgttattaccatcgatacattttcagctaagttataacatgcttccatctacctaccatatg 12593820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 105 - 174
Target Start/End: Complemental strand, 12593793 - 12593724
Alignment:
Q  105 tatgcagagaatgataacctaaatgccaccacaatagtaatcttgaattccgcaaccccctaactatgtt 174  Q
    |||| ||||||||| |||||||||||||||||||||| |||||||||||  |||| ||| | ||||||||    
T  12593793 tatgtagagaatgaaaacctaaatgccaccacaatagcaatcttgaattttgcaatcccttgactatgtt 12593724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 205 - 270
Target Start/End: Complemental strand, 12593703 - 12593639
Alignment:
Q  205 cattggactttgtcagatgtataactcagacacatccattgaagttccagaactcactcagattgg 270  Q
    ||||||||||| ||||||||||||| ||||| || ||  |||||||| |||||||||| |||||||    
T  12593703 cattggacttt-tcagatgtataacgcagacgcaaccgatgaagttctagaactcacttagattgg 12593639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 56; Significance: 7e-23; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 549 - 656
Target Start/End: Complemental strand, 619094 - 618987
Alignment:
Q  549 atgaatgatatacttacttcaacatcccgagtgtgacacaatgttagcatcattttctgggtcggtgaatcgaatatccttcatgctccttttctctttc 648  Q
    ||||||||| ||||||||| ||||||||| |||| ||||||||||||||||| | |||||||   ||||||||||||| |||||| | |||||||||| |    
T  619094 atgaatgatgtacttactttaacatcccgggtgtaacacaatgttagcatcaatctctgggttactgaatcgaatatctttcatgttacttttctcttcc 618995  T
Q  649 aatacatg 656  Q
    ||||||||    
T  618994 aatacatg 618987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 20 - 107
Target Start/End: Complemental strand, 620052 - 619967
Alignment:
Q  20 attttcaactaagtatcatattataccttattattatcattaatacattttcaactaattataacatgcttacatctacctatcatat 107  Q
    |||||||||||| | |||||  |||| || |||||||||| || ||||||||||| || ||||||||||||||||||||||| |||||    
T  620052 attttcaactaaatctcata--atacttttttattatcatcaacacattttcaacgaagtataacatgcttacatctacctaccatat 619967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 48; Significance: 4e-18; HSPs: 2)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 341 - 412
Target Start/End: Original strand, 199107 - 199178
Alignment:
Q  341 tgaagaatctttcacttattcatcacatgcttttggatctattcttcagcataatagaaaaagaagatagtc 412  Q
    ||||| |||||||||| ||||||||||||| |||||||| |||||||||| |||||||||||||||| ||||    
T  199107 tgaagcatctttcactgattcatcacatgcctttggatccattcttcagcctaatagaaaaagaagaaagtc 199178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 614 - 656
Target Start/End: Original strand, 208626 - 208668
Alignment:
Q  614 tgaatcgaatatccttcatgctccttttctctttcaatacatg 656  Q
    ||||||||||||| |||||||| ||| ||||||||||||||||    
T  208626 tgaatcgaatatcgttcatgctacttctctctttcaatacatg 208668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University