View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17647_high_5 (Length: 553)
Name: NF17647_high_5
Description: NF17647
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17647_high_5 |
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Alignment Details
Target: chr7 (Bit Score: 424; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 424; E-Value: 0
Query Start/End: Original strand, 29 - 542
Target Start/End: Original strand, 32503153 - 32503647
Alignment:
| Q |
29 |
ggtaattgctttacaattcccttgaattgctgaaaatttcacagaaacaagcatcaggtcctagaatgcgatccaccctttaagcaaaaaatgcccatcc |
128 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32503153 |
ggtaattgctctacaattcccttgaattgctgaaaatttcacagaaacaagcatcaggtcctagaatgcgatccaccctttaagcaaaaaatgcccatcc |
32503252 |
T |
|
| Q |
129 |
gaagtcgtgaccagacggggcgagcaatggtgagaagcacactaagcaatcttaaaggatgggcccaacttgttttggattgagtggtttaaatttgcag |
228 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||| |
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| T |
32503253 |
gaagtcgtgaccagacggggcgagcaatggtgagaggcacactaagcaatcttaaaggaggggcccaacttgtttcggattgagtggtttaaatttgcag |
32503352 |
T |
|
| Q |
229 |
gcattttgggtctattgctgagcatggtgtttccattggaacaaattgaatgatggggttggaggttttcaggagtatgatgcaggcttagcgagactgg |
328 |
Q |
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| T |
32503353 |
gaattttgggtctattactgagcatggtgttcc-------------------atggggttggaggttttcaggagtatgatgcaggcttagcgagactgg |
32503433 |
T |
|
| Q |
329 |
gttttggttacagtcaattgggcagggtattggggaactaagcacaacccgtctaatttttggcaaacggaactcataaccattttttggccgagattac |
428 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32503434 |
gttttggttacagtcaattgggcagggtattggggaactaagcacaacccgtctaatttttggcaaacggaactcataaccattttttggccgagattac |
32503533 |
T |
|
| Q |
429 |
ccaagttactacccgcaaaatccaaataagaaactggtgttgcatgcggattgaagggggtgttgggtactcaaatgacagatgagttagtaacagtttt |
528 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32503534 |
ccaagttactacccgcaaaatccaaataagaaactggtgttgcatgcggattgaagggggtgttgggtactcaaatgacagatgagttagtaacagtttt |
32503633 |
T |
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