View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17647_high_7 (Length: 471)

Name: NF17647_high_7
Description: NF17647
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17647_high_7
NF17647_high_7
[»] chr5 (6 HSPs)
chr5 (275-332)||(40406442-40406499)
chr5 (275-332)||(40362409-40362466)
chr5 (275-317)||(40457359-40457401)
chr5 (275-328)||(40363368-40363421)
chr5 (275-332)||(40409151-40409208)
chr5 (82-134)||(40374521-40374573)


Alignment Details
Target: chr5 (Bit Score: 46; Significance: 5e-17; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 275 - 332
Target Start/End: Original strand, 40406442 - 40406499
Alignment:
Q  275 tgatgagggattggacggtggaaaccaaatttcacaaactcttctccaagaaattgaa 332  Q
    ||||||||||||||| |||||||||||||||||||||||||||||| ||| |||||||    
T  40406442 tgatgagggattggagggtggaaaccaaatttcacaaactcttctcgaagcaattgaa 40406499  T

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Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 275 - 332
Target Start/End: Original strand, 40362409 - 40362466
Alignment:
Q  275 tgatgagggattggacggtggaaaccaaatttcacaaactcttctccaagaaattgaa 332  Q
    ||||||||||||||| |||||||||||||||||||||||||| ||| ||| |||||||    
T  40362409 tgatgagggattggagggtggaaaccaaatttcacaaactctactcaaagcaattgaa 40362466  T

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Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 275 - 317
Target Start/End: Complemental strand, 40457401 - 40457359
Alignment:
Q  275 tgatgagggattggacggtggaaaccaaatttcacaaactctt 317  Q
    ||||||||||||||| |||||||||||||||||||||||||||    
T  40457401 tgatgagggattggagggtggaaaccaaatttcacaaactctt 40457359  T

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Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 275 - 328
Target Start/End: Complemental strand, 40363421 - 40363368
Alignment:
Q  275 tgatgagggattggacggtggaaaccaaatttcacaaactcttctccaagaaat 328  Q
    |||| |||||||||| |||||||||||| |||||| |||||||||| |||||||    
T  40363421 tgataagggattggatggtggaaaccaagtttcactaactcttctcaaagaaat 40363368  T

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Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 275 - 332
Target Start/End: Original strand, 40409151 - 40409208
Alignment:
Q  275 tgatgagggattggacggtggaaaccaaatttcacaaactcttctccaagaaattgaa 332  Q
    ||||||||||||| | |||||||||||||||||||||||| | ||| ||| |||||||    
T  40409151 tgatgagggattgaagggtggaaaccaaatttcacaaactttactcaaagcaattgaa 40409208  T

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Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 82 - 134
Target Start/End: Complemental strand, 40374573 - 40374521
Alignment:
Q  82 tcatttttgttttactataggcagataataaaggttagcggggattagtgttt 134  Q
    ||||| |||||||  |||||||||||||||||||||||| ||||||| |||||    
T  40374573 tcattgttgttttcttataggcagataataaaggttagctgggattaatgttt 40374521  T

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