View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17647_low_1 (Length: 971)
Name: NF17647_low_1
Description: NF17647
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17647_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 223; Significance: 1e-122; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 535 - 957
Target Start/End: Original strand, 40179373 - 40179802
Alignment:
| Q |
535 |
aaacaccaaacataacctagaattgtcatgtgtttggcttcacggtaaggagagacaaaagtgattccaaacgcataaaaatgattttgacatattaatg |
634 |
Q |
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| T |
40179373 |
aaacaccaaacacaacctagaattgtcatgtgtttggcttcacggtaaggagagacaaaagtgattccaaacgcataaaaacaattttgacat------- |
40179465 |
T |
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| Q |
635 |
ccatcattatcaaaaaggaaagcagctatccataaccaaatttaactg--agttcaatttaataacatattaaaa-attcacctgactcctaaccatt-- |
729 |
Q |
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| T |
40179466 |
----cattatcgaaaaggaaagcagctataaataaccaaattagactgtgagttcaatttaataatatattaaaatattcacctgactcctaaccatttt |
40179561 |
T |
|
| Q |
730 |
------------ttctccactcaattatttttgcattaatagtttaacctcctatgaaaatgatgccctgatattaagatggatttcttctagcttttct |
817 |
Q |
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| T |
40179562 |
tttccaaacattttctccactcaattatttttgcattaatagtttaacctcctatgaaaatgatgccctgatattaagatggatttcttctagcttttct |
40179661 |
T |
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| Q |
818 |
tttgccattctcctatccatagactcc--atttcccacagctgcatccttacaatgtccctatccttatcattcaagcaaagagggtggatcaacttgtg |
915 |
Q |
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| T |
40179662 |
tttgccattctcctatccatagactccatatttcccgtagctgcatccgtacaattttccgatccgtatccttcgagcaacgagagtggatcaatttgtg |
40179761 |
T |
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| Q |
916 |
atattcatccagattgatggataaaccataatccttcttctc |
957 |
Q |
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| T |
40179762 |
atattcatccagattgattg-taaaccaaaatccttcatctc |
40179802 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 331 - 476
Target Start/End: Original strand, 40179240 - 40179374
Alignment:
| Q |
331 |
aaaaccaatttgatttgtgaacttttctacacataacacattagtagtttcctgtcactttaggaaaaatataaaacttttctttatctctctccaagtt |
430 |
Q |
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| T |
40179240 |
aaaaccaatttgatttgtgaacttttctacacataacacattagtagtttcctatcactttaggaa-----------ttttctttatctctcaccaagtt |
40179328 |
T |
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| Q |
431 |
accataacaaaggtgaacctctattaagcaaatgcatttcaaagaa |
476 |
Q |
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| T |
40179329 |
accataacaaaggtgaacttctattaagcaaatgcatttcaaagaa |
40179374 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 65; E-Value: 5e-28
Query Start/End: Original strand, 50 - 118
Target Start/End: Original strand, 40178499 - 40178567
Alignment:
| Q |
50 |
aagaatgccaagaactgcaaccatacatttgtttcttcgcgatcttgtatcaatggatgagtaagagta |
118 |
Q |
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| T |
40178499 |
aagaatgccaagaactgcaaccataaatttgtttcttcgcgatcttgtatcaatggatgagtaagagta |
40178567 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 719 - 797
Target Start/End: Complemental strand, 41584343 - 41584266
Alignment:
| Q |
719 |
tcctaaccattttctccactcaattatttttgcattaatagtttaacctcctatgaaaatgatgccctgatattaagat |
797 |
Q |
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| T |
41584343 |
tcctaacc-ttttctccactcaattaattttgcattaagattctaacatattatcaaaatgatgccctaatattaagat |
41584266 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 62 - 106
Target Start/End: Complemental strand, 41536371 - 41536327
Alignment:
| Q |
62 |
aactgcaaccatacatttgtttcttcgcgatcttgtatcaatgga |
106 |
Q |
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| T |
41536371 |
aactgcaaccatacctttctctcttcgcgatcttgtatcaatgga |
41536327 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.0000000000004; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 874 - 957
Target Start/End: Complemental strand, 9161579 - 9161496
Alignment:
| Q |
874 |
cctatccttatcattcaagcaaagagggtggatcaacttgtgatattcatccagattgatggataaaccataatccttcttctc |
957 |
Q |
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||||||| || | |||||| |||||| ||||| |||||||||||||||||| ||||||||||| |||| | |||||||| |||| |
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| T |
9161579 |
cctatccatagccttcaagaaaagagagtggaccaacttgtgatattcatcaagattgatggagaaacaaaaatccttcgtctc |
9161496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 887 - 957
Target Start/End: Complemental strand, 9160501 - 9160431
Alignment:
| Q |
887 |
ttcaagcaaagagggtggatcaacttgtgatattcatccagattgatggataaaccataatccttcttctc |
957 |
Q |
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| T |
9160501 |
ttcaagcgaagagagtggatcaacttgtgatattcataaagattcatggagaaaccaaaatccttcatctc |
9160431 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 481 - 539
Target Start/End: Complemental strand, 9162015 - 9161957
Alignment:
| Q |
481 |
aaagcattttaaatcccttaaaaaatagcattccctatctagaaggtttcgtccaaaca |
539 |
Q |
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| T |
9162015 |
aaagcattttaaatcccttaaaaaatagtgttccctgtgtagaatgtttcgtccaaaca |
9161957 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 726 - 784
Target Start/End: Complemental strand, 9160675 - 9160617
Alignment:
| Q |
726 |
cattttctccactcaattatttttgcattaatagtttaacctcctatgaaaatgatgcc |
784 |
Q |
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| T |
9160675 |
cattttctccattgaaatagttgtgcattaatattttaacctcctatgaaaatgatgcc |
9160617 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 728 - 849
Target Start/End: Complemental strand, 9161770 - 9161649
Alignment:
| Q |
728 |
ttttctccactcaattatttttgcattaatagtttaacctcctatgaaaatgatgccctgatattaagatggatttcttctagcttttcttttgccattc |
827 |
Q |
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| T |
9161770 |
ttttctccactaaaatatgttttctctaatattttaacctcctacgaaaattatgctctaatattcagattcatctcctctagcttctcttttgccactc |
9161671 |
T |
|
| Q |
828 |
tcctatccatagactccatttc |
849 |
Q |
| |
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| T |
9161670 |
tcgaatccatagagttcatttc |
9161649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 579 - 630
Target Start/End: Complemental strand, 9161940 - 9161889
Alignment:
| Q |
579 |
gtaaggagagacaaaagtgattccaaacgcataaaaatgattttgacatatt |
630 |
Q |
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| T |
9161940 |
gtaaggagagacaaaagtgatttcagacgtataaatttgattttgacatatt |
9161889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 581 - 630
Target Start/End: Original strand, 9129272 - 9129321
Alignment:
| Q |
581 |
aaggagagacaaaagtgattccaaacgcataaaaatgattttgacatatt |
630 |
Q |
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| T |
9129272 |
aaggagagacaaaagtgattccagacgcataaatttgattctaacatatt |
9129321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 581 - 630
Target Start/End: Complemental strand, 9181254 - 9181205
Alignment:
| Q |
581 |
aaggagagacaaaagtgattccaaacgcataaaaatgattttgacatatt |
630 |
Q |
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| T |
9181254 |
aaggagagacaaaagtgattccagacgcataaatttgattctaacatatt |
9181205 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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