View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17647_low_12 (Length: 415)
Name: NF17647_low_12
Description: NF17647
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17647_low_12 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 44 - 415
Target Start/End: Original strand, 28090033 - 28090408
Alignment:
| Q |
44 |
atgaataagtagataatctatggttcaaaccttaacccttacatattaaagtgattttgacttaaactaagttcaatgttaagtgatttatgttcgatac |
143 |
Q |
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| T |
28090033 |
atgaataagtagagaatttatggttcaaacctcaactcttacatattaaagtgattttgaccgaaattaagttcaatgttaaatgatttatgttcgatac |
28090132 |
T |
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| Q |
144 |
attcacatattaaagtaagtagaaaactcggataagaaaagttaaacaaaaaacaggaatatctcaatccaacatccatgtgacccaaaagaaccatcct |
243 |
Q |
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| T |
28090133 |
attcgcatattaaagtaagtagaaaactcggataagaaaagttaaacaaataacaggaatatctcaatccaacatccatgtgacccaaaagaaccatcct |
28090232 |
T |
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| Q |
244 |
tccacacaattttttggattaagtcagaagtattaatttgatt-nnnnnnnncactgaatcccattacagtaataagaatgtactttaactttggacaag |
342 |
Q |
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| T |
28090233 |
tccacacaattttttggattaagtcggaagtattaatttgattaaataaaaacactgaatcccattacagtaataagaatgtgctttaactttggacaag |
28090332 |
T |
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| Q |
343 |
tttcaac---cnnnnnnnncatgtgcttagtgaagcaccaaaccagtcttactcttcaaagagtcgataaaggata |
415 |
Q |
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| T |
28090333 |
tttcaacaaaaaaaaaaaacatgtgcttagtgaagcaccaaaccagtcttactcttcaaagagtcgataaaggata |
28090408 |
T |
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Target: chr2 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 21 - 54
Target Start/End: Complemental strand, 10495842 - 10495809
Alignment:
| Q |
21 |
tgattagaaattcaactcttaagatgaataagta |
54 |
Q |
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| T |
10495842 |
tgattagaaattcaactcttaagatgaataagta |
10495809 |
T |
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