View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17647_low_13 (Length: 411)
Name: NF17647_low_13
Description: NF17647
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17647_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 267; Significance: 1e-149; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 127 - 401
Target Start/End: Complemental strand, 7488639 - 7488365
Alignment:
| Q |
127 |
caaacaaataaagtttgtttcattgactcctaatttgtaggttacttcaacagttgaaaaattgagctcagaagggatatcagagaagatgaatttagga |
226 |
Q |
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| T |
7488639 |
caaacaaataaagtttgtttcattgactcctaatttgtaggttacttcaacagttgaaaaattgagcttagaagggatatcagagaagatgaatttagga |
7488540 |
T |
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| Q |
227 |
atagatttagagactgagattttggtgtggcttcctctaaattcattgatgggttttagatgtgttcaacggtcttggaatgatcttactcagaacccca |
326 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7488539 |
atagatttagagactgagattttggtgtggcttcctctaaattcattgatgggttttagatgtgttcaacggtcttggaatgatcttactcagaacccca |
7488440 |
T |
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| Q |
327 |
cctttctgaaaaggaggcacataaacatgtctgacagtcctaatctcatgatccttcatgaaacaaaaccctatg |
401 |
Q |
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| T |
7488439 |
cctttctgaaaaggaggcacataaacatgtctgatagtcctaatctcatgatccttcatgaaacaaaaccctatg |
7488365 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 202 - 339
Target Start/End: Complemental strand, 7475700 - 7475563
Alignment:
| Q |
202 |
gatatcagagaagatgaatttaggaatagatttagagactgagattttggtgtggcttcctctaaattcattgatgggttttagatgtgttcaacggtct |
301 |
Q |
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|||||| |||||||||| |||||||||||||||||||| ||||||||| |||||||| || |||| ||||||||| | |||||| ||||||||| ||| |
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| T |
7475700 |
gatatcggagaagatgagtttaggaatagatttagagattgagattttagtgtggctgccattaaagtcattgatgagctttagacttgttcaacgttct |
7475601 |
T |
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| Q |
302 |
tggaatgatcttactcagaaccccacctttctgaaaag |
339 |
Q |
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| T |
7475600 |
tggaatgatcttattcagacccccacctttctgaaaag |
7475563 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 227 - 356
Target Start/End: Original strand, 7873146 - 7873275
Alignment:
| Q |
227 |
atagatttagagactgagattttggtgtggcttcctctaaattcattgatgggttttagatgtgttcaacggtcttggaatgatcttactcagaacccca |
326 |
Q |
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|||||||||||||| |||||||||||||| |||| |||||| |||||||| |||||||||||||| |||| |||||||||||||||| |||||| || | |
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| T |
7873146 |
atagatttagagacggagattttggtgtgacttcttctaaagtcattgattcgttttagatgtgttgaacgttcttggaatgatcttattcagaaaccta |
7873245 |
T |
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| Q |
327 |
cctttctgaaaaggaggcacataaacatgt |
356 |
Q |
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||||| ||||||| ||||| || ||||||| |
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| T |
7873246 |
cctttatgaaaagaaggcagatgaacatgt |
7873275 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 203 - 382
Target Start/End: Original strand, 6943480 - 6943659
Alignment:
| Q |
203 |
atatcagagaagatgaatttaggaatagatttagagactgagattttggtgtggcttcctctaaattcattgatgggttttagatgtgttcaacggtctt |
302 |
Q |
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||||| |||| | |||||||||| ||||||||||||| |||||||||| |||||| || ||||| ||||||||| ||| |||||||||||||| |||| |
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| T |
6943480 |
atatcggagatggtgaatttagggttagatttagagacggagattttggcgtggctgccactaaagtcattgatgcttttcagatgtgttcaacgatctt |
6943579 |
T |
|
| Q |
303 |
ggaatgatcttactcagaaccccacctttctgaaaaggaggcacataaacatgtctgacagtcctaatctcatgatcctt |
382 |
Q |
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|||||| |||| ||||| ||| ||||||||||| || ||||||| || ||| ||| ||||||| ||||||||||||| |
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| T |
6943580 |
ggaatgttcttgttcagagccctgcctttctgaaacggcggcacatgaatatgcatgatagtcctagtctcatgatcctt |
6943659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 20 - 61
Target Start/End: Complemental strand, 7488746 - 7488705
Alignment:
| Q |
20 |
ctcagttcagttttgttctgttcattgaatctgctatgttga |
61 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
7488746 |
ctcagttcagttttgttctgttcattgaatctgctatgttga |
7488705 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 134 - 170
Target Start/End: Original strand, 7873012 - 7873048
Alignment:
| Q |
134 |
ataaagtttgtttcattgactcctaatttgtaggtta |
170 |
Q |
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|||| |||||||||||||||||||||||||| ||||| |
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| T |
7873012 |
ataacgtttgtttcattgactcctaatttgtcggtta |
7873048 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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