View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17647_low_15 (Length: 389)
Name: NF17647_low_15
Description: NF17647
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17647_low_15 |
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Alignment Details
Target: chr3 (Bit Score: 324; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 1 - 373
Target Start/End: Original strand, 7529269 - 7529641
Alignment:
| Q |
1 |
tgtatttattatgttgatgtcactttgctacctccnnnnnnngccccttggggattcatattatctacctattctctgctgagctaagttaatgccctca |
100 |
Q |
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||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| ||||||||||||||||| |||| |
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| T |
7529269 |
tgtatttattatgttaatgtcactttgctacctcctttttttgccccttggggattcatattatctacctattttcttctgagctaagttaatgctctca |
7529368 |
T |
|
| Q |
101 |
tgatgaataagattttatcactgcaattttacaatgaaattatatgaatttggtcttaaatcaaaagcaaaacattttcaaataccactttacactgcac |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7529369 |
tgatgaataagattttatcactgcaattttacaatgaaattatatgaatttggtcttaaatcaaaagcaaaacattttcaaataccactttacactgcac |
7529468 |
T |
|
| Q |
201 |
atacactaagaacaacaaatctacacaagtaataaaacccagttcaattaacagccacatagtgtgccgcttctccagcaatttcattgtaaaaatttgg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
7529469 |
atacactaagaacaacaaatctacacaagtaataaaacccagttcaattaacagccacatagtgtgccgcttctcctgcaatttcattgtaaaaatttgg |
7529568 |
T |
|
| Q |
301 |
cgccaacaatgattagcgcgggttatctcaaatcaataccataacaacataggtgtactaaacgggtagtttc |
373 |
Q |
| |
|
|| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7529569 |
cgtcaacaatgattagtgcgggttatctcaaatcaataccataacaacataggtgtactaaacgggtagtttc |
7529641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 1 - 373
Target Start/End: Complemental strand, 7539621 - 7539249
Alignment:
| Q |
1 |
tgtatttattatgttgatgtcactttgctacctccnnnnnnngccccttggggattcatattatctacctattctctgctgagctaagttaatgccctca |
100 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| ||||||||||||||||| |||| |
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|
| T |
7539621 |
tgtatttattatgttaatgtcactttgctacctcctttttttgccccttggggattcatattatctacctattttctactgagctaagttaatgctctca |
7539522 |
T |
|
| Q |
101 |
tgatgaataagattttatcactgcaattttacaatgaaattatatgaatttggtcttaaatcaaaagcaaaacattttcaaataccactttacactgcac |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
7539521 |
tgatgaataagattttatcactgcaattttacaatgaaattatatgaatttggactgaaatcaaaagcaaaacattttcaaataccactttacactgcac |
7539422 |
T |
|
| Q |
201 |
atacactaagaacaacaaatctacacaagtaataaaacccagttcaattaacagccacatagtgtgccgcttctccagcaatttcattgtaaaaatttgg |
300 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7539421 |
atacactaagaacaacaaatctacacaagtaataaaacccaattcaattaacagccacatagtgtgccgcttctccagcaatttcattgtaaaaatttgg |
7539322 |
T |
|
| Q |
301 |
cgccaacaatgattagcgcgggttatctcaaatcaataccataacaacataggtgtactaaacgggtagtttc |
373 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
7539321 |
cgccaacaatgattagcgcgggttatctcaaatcaataccataacaacataggtgtactaaacgggtagtttc |
7539249 |
T |
|
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