View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17647_low_16 (Length: 380)
Name: NF17647_low_16
Description: NF17647
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17647_low_16 |
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Alignment Details
Target: chr3 (Bit Score: 327; Significance: 0; HSPs: 9)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 20 - 370
Target Start/End: Complemental strand, 45650487 - 45650137
Alignment:
| Q |
20 |
ctgggcacacagtggatgaagttaaagaaagtgactataaatcatgcacaactggaaattcaattagtactgacagcagtggtgccacaaccattcccct |
119 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
45650487 |
ctgggcacacagtggatgaagttaaagaaagtgactataaatcatgcacaactggaaattcaattagtactgacagcagtggtcccacaaccattcccct |
45650388 |
T |
|
| Q |
120 |
caagaaagcaggaacacattacttcatatgtgctgttcctggacattgcacaggtggcatgaaactttctgttaaggttaagtcttcttctagtgctgct |
219 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||| || |
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| T |
45650387 |
caagaaagcaggaacacattacttcatatgtgctgttcctggacattgcacaggtggcatgaaactttctgttaaagttaaggcttcttctagtgcttct |
45650288 |
T |
|
| Q |
220 |
tctgctccttctgcaacaccatcgccatcagggaaaggttcaccttccgatggcacccctgctgcaaccaccaccactactccttccacacaaagtgcat |
319 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45650287 |
tctgctccttctgcaacaccatcgccatcagggaaaggttcaccttctgatggcacccctgctgcaaccaccaccactactccttccacacaaagtgcat |
45650188 |
T |
|
| Q |
320 |
cttcatctactagtatctcaccaaatgttgctttatttttcactgtttcat |
370 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
45650187 |
cttcatctactagtatctcaccaattgttgctttatttttcactgtttcat |
45650137 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 20 - 368
Target Start/End: Complemental strand, 45643223 - 45642881
Alignment:
| Q |
20 |
ctgggcacacagtggatgaagttaaagaaagtgactataaatcatgcacaactggaaattcaattagtactgacagcagtggtgccacaaccattcccct |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || |||||||||||||||||||| |
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| T |
45643223 |
ctgggcacacagtggatgaagttaaagaaagtgactataaatcatgcacaactggaaattcaattagtacagacagtagcggtgccacaaccattcccct |
45643124 |
T |
|
| Q |
120 |
caagaaagcaggaacacattacttcatatgtgctgttcctggacattgcacaggtggcatgaaactttctgttaaggttaagtcttcttctagtgctgct |
219 |
Q |
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||| |||| |||||||||||||||||||||||| ||||||||||||||||| |||||||||||| | ||||||||||||| |||||| || |
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| T |
45643123 |
caaagaagcgggaacacattacttcatatgtgctattcctggacattgcacatttggcatgaaactctttgttaaggttaagccttctt---------ct |
45643033 |
T |
|
| Q |
220 |
tctgctccttctgcaacaccatcgccatcagggaaaggttcaccttccgatggcacccctgctg---caaccaccaccactactccttccacacaaagtg |
316 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||| | |||||||||||||||||||| ||| |||||||| |
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| T |
45643032 |
gctgctccttctgcaacaccattaccatcagggaaaggttcaccttccgatcgcacccctgccgcaacaaccaccaccactactcctaccatacaaagtg |
45642933 |
T |
|
| Q |
317 |
catcttcatctactagtatctcaccaaatgttgctttatttttcactgtttc |
368 |
Q |
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|||||||| |||||| |||||||||| ||||||||| |||||||||||||| |
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|
| T |
45642932 |
catcttcagctactaccatctcaccaactgttgctttctttttcactgtttc |
45642881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 23 - 198
Target Start/End: Original strand, 45886916 - 45887094
Alignment:
| Q |
23 |
ggcacacagtggatgaagttaaagaaagtgactataaatcatgcacaactggaaattcaattagtactgacagcagtggtgccacaaccattcccctcaa |
122 |
Q |
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|
|||||||||||||||||||||| |||||||||||||| |||||||||||| |||||||||||||||| ||| | |||||||||||||||||||||||||| |
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| T |
45886916 |
ggcacacagtggatgaagttaatgaaagtgactataattcatgcacaactagaaattcaattagtacagacggtagtggtgccacaaccattcccctcaa |
45887015 |
T |
|
| Q |
123 |
gaaagcaggaacacattacttcatatgtgctgttcctggacattgcaca---ggtggcatgaaactttctgttaaggtt |
198 |
Q |
| |
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||||||||||| ||||||||||||||||||||||||| |||||||| | |||||||||||||| |||||||||||| |
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| T |
45887016 |
aaaagcaggaactcattacttcatatgtgctgttcctgtacattgcataagtggtggcatgaaactctctgttaaggtt |
45887094 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 23 - 198
Target Start/End: Original strand, 45703104 - 45703282
Alignment:
| Q |
23 |
ggcacacagtggatgaagttaaagaaagtgactataaatcatgcacaactggaaattcaattagtactgacagcagtggtgccacaaccattcccctcaa |
122 |
Q |
| |
|
||||||||||||||||||||| |||||||||||| |||||||||||||| |||||||||||||||| ||| | |||||||||||||||||||||||||| |
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|
| T |
45703104 |
ggcacacagtggatgaagttagggaaagtgactatcaatcatgcacaactagaaattcaattagtacagacggtagtggtgccacaaccattcccctcaa |
45703203 |
T |
|
| Q |
123 |
gaaagcaggaacacattacttcatatgtgctgttcctggacattgcaca---ggtggcatgaaactttctgttaaggtt |
198 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||| |||||||| | |||||||||||||| |||||||||||| |
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| T |
45703204 |
aaaagcaggaactcattacttcatatgtgctgttcctgtacattgcataagtggtggcatgaaactctctgttaaggtt |
45703282 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 231 - 370
Target Start/End: Original strand, 45703423 - 45703562
Alignment:
| Q |
231 |
tgcaacaccatcgccatcagggaaaggttcaccttccgatggcacccctgctgcaaccaccaccactactccttccacacaaagtgcatcttcatctact |
330 |
Q |
| |
|
|||| ||||||| |||||||| ||||||| ||||||||||| |||||| || ||||| |||||||| |||||| ||| ||||||||||||||| ||||| |
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| T |
45703423 |
tgcagcaccatcaccatcaggaaaaggtttaccttccgatgacacccccgccgcaacaaccaccaccactcctaccatgcaaagtgcatcttcagctact |
45703522 |
T |
|
| Q |
331 |
agtatctcaccaaatgttgctttatttttcactgtttcat |
370 |
Q |
| |
|
|||||||||||| |||||| || ||||| | |||||||| |
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| T |
45703523 |
tgtatctcaccaattgttgccttcttttttattgtttcat |
45703562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 231 - 370
Target Start/End: Original strand, 45887229 - 45887368
Alignment:
| Q |
231 |
tgcaacaccatcgccatcagggaaaggttcaccttccgatggcacccctgctgcaaccaccaccactactccttccacacaaagtgcatcttcatctact |
330 |
Q |
| |
|
|||| ||||||| |||||||| ||||||| ||||||||||| |||||| || ||||| |||||||| |||||| ||| ||||||||||||||| ||||| |
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| T |
45887229 |
tgcagcaccatcaccatcaggaaaaggtttaccttccgatgacacccccgccgcaacaaccaccaccactcctaccatgcaaagtgcatcttcagctact |
45887328 |
T |
|
| Q |
331 |
agtatctcaccaaatgttgctttatttttcactgtttcat |
370 |
Q |
| |
|
|||||||||||| |||||| || ||||| | |||||||| |
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| T |
45887329 |
tgtatctcaccaattgttgccttcttttttattgtttcat |
45887368 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 202 - 266
Target Start/End: Original strand, 45703307 - 45703371
Alignment:
| Q |
202 |
tcttcttctagtgctgcttctgctccttctgcaacaccatcgccatcagggaaaggttcaccttc |
266 |
Q |
| |
|
||||||||| | || |||||||||||||||| ||||||| |||||||| |||||||||||||| |
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|
| T |
45703307 |
tcttcttcttcttcttcttctgctccttctgctgcaccatcaccatcaggaaaaggttcaccttc |
45703371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 221 - 266
Target Start/End: Original strand, 45887132 - 45887177
Alignment:
| Q |
221 |
ctgctccttctgcaacaccatcgccatcagggaaaggttcaccttc |
266 |
Q |
| |
|
||||||||||||| ||||||| |||||||| |||||||||||||| |
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|
| T |
45887132 |
ctgctccttctgctgcaccatcaccatcaggaaaaggttcaccttc |
45887177 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 25 - 153
Target Start/End: Complemental strand, 45634848 - 45634720
Alignment:
| Q |
25 |
cacacagtggatgaagttaaagaaagtgactataaatcatgcacaactggaaattcaattagtactgacagcagtggtgccacaaccattcccctcaaga |
124 |
Q |
| |
|
||||| |||||||||||| || ||||||||| | || ||||| ||||||||| |||||||| | |||| ||||||| |||||||| | || |||| |
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|
| T |
45634848 |
cacactgtggatgaagttgcagcaagtgactacatctcctgcaccactggaaatccaattagttcagacaatagtggtgagacaaccatagctcttaaga |
45634749 |
T |
|
| Q |
125 |
aagcaggaacacattacttcatatgtgct |
153 |
Q |
| |
|
|||||||| ||||| ||||||| |||| |
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|
| T |
45634748 |
ctgcaggaactcattatttcatatctgct |
45634720 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 22 - 110
Target Start/End: Complemental strand, 30054844 - 30054756
Alignment:
| Q |
22 |
gggcacacagtggatgaagttaaagaaagtgactataaatcatgcacaactggaaattcaattagtactgacagcagtggtgccacaac |
110 |
Q |
| |
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||||||||||||||| |||||||||||||||||||||||||||||| ||| |||||||||||||||| ||||| || ||||||||||| |
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| T |
30054844 |
gggcacacagtggattaagttaaagaaagtgactataaatcatgcataaccagaaattcaattagtacagacagtagcggtgccacaac |
30054756 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 281 - 370
Target Start/End: Original strand, 1193586 - 1193678
Alignment:
| Q |
281 |
ctgcaaccaccaccactactccttccacacaaagtgcatcttcatctactagtatctcaccaaatgttg---ctttatttttcactgtttcat |
370 |
Q |
| |
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||||||| ||||||||||||||| | || ||||||||||||||| ||||||| ||| ||||| ||||| |||||||||||| |||||||| |
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| T |
1193586 |
ctgcaactaccaccactactcctactacgcaaagtgcatcttcagctactaggctctaaccaattgttgcttctttatttttcattgtttcat |
1193678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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